selecting specific fields in a file (maybe with sed?)
Hi,
I have a file with following lines:
I need to extract 4 fields from these lines, the 1st and 2nd column, and AF and DP values. I could have used cut command if AF and DP were printed in the same order, but this is not the case.
I think forming columns (by separating the 3rd line) and removing any column not containing AF or DP would be a nice solution, but I am not an expert on sed. I tried a couple of commands, but to no avail.
Last edited by Yogesh Sawant; 01-27-2011 at 07:45 AM..
Reason: added code tags
Hi,
I have a file whose content and format at places is as given below.
print
coloumn ....
coloumn ....
coloumn ....
skip 1 line
print
coloumn ...
skip 1 line
I need to select the following :
print
coloumn ....
coloumn ....
coloumn... (2 Replies)
Hello,
I need to select the 3 lines above as well as below a search string, including the search string.
I have been trying various combinations using sed command without any success.
Can anuone help please.
Thanking (2 Replies)
Hello experts,
I am new to this group and to 'SED' and 'AWK'. I have data (text file) with 5 columns (C_1-5) and 100s of lines (only 10 lines are shown below as an example). I have to find or select only the id numbers (C-1) of specific lines with '90' in the same line (of C_3) AND with '20' in... (6 Replies)
Hello,
:wall:
I have a 12 column csv file. I wish to delete the entire line if column 7 = hello and column 12 = goodbye. I have tried everything that I can find in all of my ref books.
I know this does not work
/^*,*,*,*,*,*,"hello",*,*,*,*,"goodbye"/d
Any ideas?
Thanks
Please... (2 Replies)
Dear Friends,
I have a file
a.txt
1|3478.12|487|4578.04|4505.5478|rhfj|rehtire|rhj
I want to get the field numbers which have decimal values
output:
Fields: 2,4,5
Plz help (6 Replies)
I have tab delimited input that prints out in the format below:
I am trying to add field headers to $5 and $6. Not sure if sed is the best tool but my attempt is below. Thank you :).
$5 = REF
$6 = ALT
file
ID CHR START STOP
123 1 100 200 A ... (6 Replies)
Hi there
I am trying to look for a specific word in the log file and I am aware this can be done by grep for example.
As there will be multiple entries for this I want to grep the last one to enter the log... how would I go about this - would I have to use tail?
Thanks in advance
Alex (4 Replies)
Hello All,
I have a requirement to split the input.xml file different files and i have tried using earlier examples(where i have posted in the forum), but still no luck
Here is my input.xml
<jms-system-resource>
<name>UMSJMSSystemResource</name>
... (4 Replies)
Discussion started by: Siv51427882
4 Replies
LEARN ABOUT MOJAVE
comm
COMM(1) BSD General Commands Manual COMM(1)NAME
comm -- select or reject lines common to two files
SYNOPSIS
comm [-123i] file1 file2
DESCRIPTION
The comm utility reads file1 and file2, which should be sorted lexically, and produces three text columns as output: lines only in file1;
lines only in file2; and lines in both files.
The filename ``-'' means the standard input.
The following options are available:
-1 Suppress printing of column 1.
-2 Suppress printing of column 2.
-3 Suppress printing of column 3.
-i Case insensitive comparison of lines.
Each column will have a number of tab characters prepended to it equal to the number of lower numbered columns that are being printed. For
example, if column number two is being suppressed, lines printed in column number one will not have any tabs preceding them, and lines
printed in column number three will have one.
The comm utility assumes that the files are lexically sorted; all characters participate in line comparisons.
ENVIRONMENT
The LANG, LC_ALL, LC_COLLATE, and LC_CTYPE environment variables affect the execution of comm as described in environ(7).
EXIT STATUS
The comm utility exits 0 on success, and >0 if an error occurs.
SEE ALSO cmp(1), diff(1), sort(1), uniq(1)STANDARDS
The comm utility conforms to IEEE Std 1003.2-1992 (``POSIX.2'').
The -i option is an extension to the POSIX standard.
HISTORY
A comm command appeared in Version 4 AT&T UNIX.
BUGS
Input lines are limited to LINE_MAX (2048) characters in length.
BSD January 26, 2005 BSD