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Top Forums Shell Programming and Scripting Sorting with header and mixed numerals (scientific and decimal) | awk Post 302485206 by genehunter on Tuesday 4th of January 2011 01:58:40 PM
Old 01-04-2011
Quote:
Originally Posted by vgersh99
try this:
Code:
nawk 'FNR==1{print | "cat 1>&2";next}$5=="ADD" {print $0}' OFS='\t'  Assoc.txt |sort -nrk9

Code:
awk 'FNR==1{print | "cat 1>&2";next}$5=="ADD" {print $0}' OFS='\t'  Assoc.txt  |sort -gk9 >Assoc_sorted.TXT

Code:
CHR         SNP         BP   A1       TEST    NMISS         OR         STAT            P 
FL_NoOutlr :~>head Foll_LRM_Sorted.TXT
   6   rs4530903   32689867    A        ADD     4151      2.084        5.538    3.067e-08
   6   rs9268853   32537621    C        ADD     4182      1.749        5.335    9.552e-08
   6   rs9469220   32766288    C        ADD     4164     0.5633       -5.237    1.628e-07

What happens is that it prints the header on to the terminal and the rest is piped out to the file output.
Also found out that -gk9 works for scientific notation. -nrk9 did not work as expected.
 

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ALTER USER 
MAPPING(7) PostgreSQL 9.2.7 Documentation ALTER USER MAPPING(7) NAME
ALTER_USER_MAPPING - change the definition of a user mapping SYNOPSIS
ALTER USER MAPPING FOR { user_name | USER | CURRENT_USER | PUBLIC } SERVER server_name OPTIONS ( [ ADD | SET | DROP ] option ['value'] [, ... ] ) DESCRIPTION
ALTER USER MAPPING changes the definition of a user mapping. The owner of a foreign server can alter user mappings for that server for any user. Also, a user can alter a user mapping for his own user name if USAGE privilege on the server has been granted to the user. PARAMETERS
user_name User name of the mapping. CURRENT_USER and USER match the name of the current user. PUBLIC is used to match all present and future user names in the system. server_name Server name of the user mapping. OPTIONS ( [ ADD | SET | DROP ] option ['value'] [, ... ] ) Change options for the user mapping. The new options override any previously specified options. ADD, SET, and DROP specify the action to be performed. ADD is assumed if no operation is explicitly specified. Option names must be unique; options are also validated by the server's foreign-data wrapper. EXAMPLES
Change the password for user mapping bob, serverfoo: ALTER USER MAPPING FOR bob SERVER foo OPTIONS (user 'bob', password 'public'); COMPATIBILITY
ALTER USER MAPPING conforms to ISO/IEC 9075-9 (SQL/MED). There is a subtle syntax issue: The standard omits the FOR key word. Since both CREATE USER MAPPING and DROP USER MAPPING use FOR in analogous positions, and IBM DB2 (being the other major SQL/MED implementation) also requires it for ALTER USER MAPPING, PostgreSQL diverges from the standard here in the interest of consistency and interoperability. SEE ALSO
CREATE USER MAPPING (CREATE_USER_MAPPING(7)), DROP USER MAPPING (DROP_USER_MAPPING(7)) PostgreSQL 9.2.7 2014-02-17 ALTER USER MAPPING(7)
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