Hi,
I have my application and database servers running on solaris. I need to check Db connectivity for a datasource in my Db server.
Please guide me how to do it in solaris env.
Aru (2 Replies)
I want to write a script to check if a unix box say abc.tdc.cin.net can be connected or not on certain port say 22. right know i have to telnet them manually from DOS prompt and if it is successful then isay it is connected.
Also to check Database connectivity I am using tnsping From DOS prompt.... (3 Replies)
I am working on an unix server which has a mount point of windows server in it. I just need to check about the connectivity of this mount point with the windows server. Please let me know what should be done for that. (1 Reply)
This past weekend I had some issues with my ISP.
So for future purpose I'm going to have some logging on my internet so I'm able to attach log files to my complaint email if this issue reoccurs.
Decided to do a simple ping script that runs every 5 or 10 min with crontab
if ping fail write date... (5 Replies)
Hi All,
I need an automation script to check the connectivity between 2 UNIX servers.
Could anybody please help in this regards?
regards,
janardhan (1 Reply)
Hi ,
I am able to connect to sybase using the below script ,but i want to check the status of the connectivity like if there is any network failure during downloading the file ,it will come out with exit 1 status .Any help on this ?
# isql database_name db_user_name <<EOF
select date_val from... (0 Replies)
Hi,
I need to check the sysbase database connectivity through the Unix Shell Script. Can you help me on the how to write the script to test the sysbase database connection.
Thanks in Advance
Nandha (0 Replies)
check the connectivity of the DBs through script, script should exit if no connection and display the output as below.
connectivity for DB1 is OK
connectivity for DB2 is OK
connectivity for DB3 is FAILED
for DB in 1 2 3
do
(sqlplus -s... (5 Replies)
ello,
i am new to the networking side.
I have a requirement to check the tcp network connectivity between server it's running on and the list of host's and ports combination.
please help me where i am going wrong.
my code:
#!/bin/bash
#read the file line by line
cd "$1"
cat... (17 Replies)
Hi everyone!
Some time ago, I had to check connectivity with a big list of hosts, using different formats (protocol://server:port/path/, server:port, ....).
I developed a script that checks the connectivity using different commands (ping, telnet, nc, curl).
It worked for me so I'm sharing it... (9 Replies)
Discussion started by: Fr3dY
9 Replies
LEARN ABOUT DEBIAN
disulfinder
DISULFINDER(1) User Commands DISULFINDER(1)NAME
disulfinder - cysteines disulfide bonding state and connectivity predictor
SYNOPSIS
disulfinder [OPTIONS]
DESCRIPTION
'disulfinder' is for predicting the disulfide bonding state of cysteines and their disulfide connectivity starting from sequence alone.
Disulfide bridges play a major role in the stabilization of the folding process for several proteins. Prediction of disulfide bridges from
sequence alone is therefore useful for the study of structural and functional properties of specific proteins. In addition, knowledge about
the disulfide bonding state of cysteines may help the experimental structure determination process and may be useful in other genomic
annotation tasks. 'disulfinder' predicts disulfide patterns in two computational stages: (1) the disulfide bonding state of each cysteine
is predicted by a BRNN-SVM binary classifier; (2) cysteines that are known to participate in the formation of bridges are paired by a
Recursive Neural Network to obtain a connectivity pattern.
REFERENCES
A. Ceroni, A. Passerini, A. Vullo and P. Frasconi. DISULFIND: a Disulfide Bonding State and Cysteine Connectivity Prediction Server,
Nucleic Acids Research, 34(Web Server issue):W177-W181, 2006.
For the disulphide connectivity predictor see:
A. Vullo and P. Frasconi. Disulfide Connectivity Prediction using Recursive Neural Networks and Evolutionary Information, Bioinformatics,
20, 653-659, 2004.
For the cystein bonding state predictor see:
P. Frasconi, A. Passerini, and A. Vullo. A Two-Stage SVM Architecture for Predicting the Disulfide Bonding State of Cysteines, Proc. IEEE
Workshop on Neural Networks for Signal Processing, pp.25-34, 2002.
A.Ceroni, P.Frasconi, A.Passerini and A.Vullo. Predicting the Disulfide Bonding State of Cysteines with Combinations of Kernel Machines,
Journal of VLSI Signal Processing, 35, 287-295, 2003.
OPTIONS -a, --alternatives=NUMBER
alternative connectivity patterns (default=3)
-o, --output=DIR
output dir where predictions will be saved (default=$PWD)
-p, --psi2=FILE|DIR
input in psi2 format (PSI-BLAST Matrix in ASCII), either a single file or a directory(?). Generate this with "blastpgp -j <N> -Q FILE"
where N >= 2.
-r, --rootdir=DIR
work directory (default=~/disulfinder)
-k, --pkgdatadir=DIR
package data directory containing Models (default=/usr/share/disulfinder)
-F, --format={html|ascii}
output format type (default=ascii)
-d --blastdb=DIR
blastpgp -d option (default=/data/sp+trembl)
-c, --cleanpred
cleanup intermediate prediction files (default=false)
-P, --usepssm
use pssm instead of counts for profiles (default=false)
-C, --knownbondingstate
assume bonding state is known (one file for each chain in directory <rootdir>/Predictions/Bondstate/Viterbi) (default=false)
-v, --version
disulfinder version
-?, --help
help screen
EXAMPLES
"disulfinder -a 1 -p /usr/share/doc/disulfinder/examples/res_id_41483.blastPsiMatTmb -o ./disulfinder_results_dir"
FILES
/usr/share/disulfinder
default package data directory
~/disulfinder
default work directory
RESTRICTIONS
The work directory is not cleaned up automatically.
AUTHOR
Ceroni A, Passerini A, Vullo A, Frasconi P.
Packaging by Laszlo Kajan <lkajan@rostlab.org>
COPYRIGHT AND LICENSE
GPL
SEE ALSO
See official web site for help:
<http://disulfind.dsi.unifi.it/>
DISULFIND: a disulfide bonding state and cysteine connectivity prediction server:
<http://www.ncbi.nlm.nih.gov/pubmed/?term=16844986[uid]>
1.2.11 2012-04-07 DISULFINDER(1)