12-20-2010
Quote:
Unfortunately, its (duplicate data in column) respectively column one detail still keep at the data?
Didn't get you. If you are looking for a different output, pls post expected output
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1. Shell Programming and Scripting
My input file:
AVI.out <detail>named as the RRM .</detail>
AVI.out <detail>Contains 1 RRM .</detail>
AR0.out <detail>named as the tellurite-resistance.</detail>
AWG.out <detail>Contains 2 HTH .</detail>
ADV.out <detail>named as the DENR family.</detail>
ADV.out ... (10 Replies)
Discussion started by: patrick87
10 Replies
2. Shell Programming and Scripting
Input file:
>position_10 sample:68711 coords:5453-8666 number:3 type:complete len:344
MSINQYSSDFHYHSLMWQQQQQQQQHQNDVVEEKEALFEKPLTPSDVGKLNRLVIPKQHA
ERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDA
NRTS*
>position_4 sample:68711 coords:553-866 number:4 type:partial len:483... (7 Replies)
Discussion started by: patrick87
7 Replies
3. Shell Programming and Scripting
Input file:
hcmv-US25-2-3p hsa-3160-5
hcmv-US33 hsa-47
hcmv-UL70-3p hsa-4508
hcmv-UL70-3p hsa-4486
hcms-US25 hsa-360-5
hcms-US25 hsa-4
hcms-US25 hsa-458
hcms-US25 hsa-44812
.
.
Desired Output file:
hcmv-US25-2-3p hsa-3160-5
hcmv-US33 hsa-47
hcmv-UL70-3p hsa-4508
hsa-4486... (3 Replies)
Discussion started by: perl_beginner
3 Replies
4. Shell Programming and Scripting
Input file
data_1 10 US
data_1 2 US
data_1 5 UK
data_2 20 ENGLAND
data_2 12 KOREA
data_3 4 CHINA
.
.
data_60 123 US
data_60 23 UK
data_60 45 US
Desired output file
data_1 10 US
data_1 5 UK
data_2 20 ENGLAND
data_2 12 KOREA (2 Replies)
Discussion started by: perl_beginner
2 Replies
5. Shell Programming and Scripting
Input file:
CCNI data564_input1 264
CORO1A data564_input2 155
ABC-B data17_input1 3466
ABC-B data17_input2 1133
ABC-B data17_input3 2162
ABC-B data17_input4 2019
HNRNPA2B1 data95_input1 101
HNRNPA2B1 data95_input2 340
IFITM1 data105_input2 291
IFITM2 data105_input1 505... (3 Replies)
Discussion started by: cpp_beginner
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6. Shell Programming and Scripting
Input file:
A_69510335_ASD>aw 1199470 USA
A_119571157_C>awe,QWEQE 113932840 USA
C_34646666_qwe>TAWTT,G,TT 112736796 UK
C_69510335_QW>T 1199470 USA
D_70520237_WR>QEE,G 34459863 UK
D_71380003_QWR>T 145418226 IK
.
Desired output:
A_69510335_ASD>aw 1199470 USA... (1 Reply)
Discussion started by: perl_beginner
1 Replies
7. Shell Programming and Scripting
Input file:
#data_131 0 >content..._* 1 >content..._at_+/97.20%
#data_137 0 >content..._* 1 >content..._at_+/97.20% 2 >seq..._* 3 >content..._at_+/97.20% 4 >content..._at_+/97.20%
#data_141 0 >content..._*
#data_150 0 >content..._* 1 >content..._at_+/97.20% 2 >seq..._* 3... (3 Replies)
Discussion started by: perl_beginner
3 Replies
8. Shell Programming and Scripting
I am in the process of developing a perl cgi page.
I had succeeded in developing the page but there are few errors/issues with the page.
description about cgi page:
My CGI page retrieves all the file names from an directory and displays the files in drop down menu for downloading the... (5 Replies)
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9. Shell Programming and Scripting
Here is the contents of test.txt
Dependencies Resolved
Changes in packages about to be updated:
ChangeLog for: 1:perl-Archive-Extract-0.38-131.el6_4.x86_64,
- Resolves: #915692 - CVE-2013-1667 (DoS in rehashing code)
Dependencies Resolved
Changes in packages about to be updated:
... (5 Replies)
Discussion started by: ashokvpp
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10. Shell Programming and Scripting
hi all,
i had the below script
x=`cat input.txt |wc -1`
awk 'NR>1 && NR<'$x' ' input.txt > output.txt
by using above script i am able to remove the head and tail part from the input file and able to append the output to the output.txt but if i run it for second time the output is... (2 Replies)
Discussion started by: hemanthsaikumar
2 Replies
LEARN ABOUT DEBIAN
shell-quote
SHELL-QUOTE(1p) User Contributed Perl Documentation SHELL-QUOTE(1p)
NAME
shell-quote - quote arguments for safe use, unmodified in a shell command
SYNOPSIS
shell-quote [switch]... arg...
DESCRIPTION
shell-quote lets you pass arbitrary strings through the shell so that they won't be changed by the shell. This lets you process commands
or files with embedded white space or shell globbing characters safely. Here are a few examples.
EXAMPLES
ssh preserving args
When running a remote command with ssh, ssh doesn't preserve the separate arguments it receives. It just joins them with spaces and
passes them to "$SHELL -c". This doesn't work as intended:
ssh host touch 'hi there' # fails
It creates 2 files, hi and there. Instead, do this:
cmd=`shell-quote touch 'hi there'`
ssh host "$cmd"
This gives you just 1 file, hi there.
process find output
It's not ordinarily possible to process an arbitrary list of files output by find with a shell script. Anything you put in $IFS to
split up the output could legitimately be in a file's name. Here's how you can do it using shell-quote:
eval set -- `find -type f -print0 | xargs -0 shell-quote --`
debug shell scripts
shell-quote is better than echo for debugging shell scripts.
debug() {
[ -z "$debug" ] || shell-quote "debug:" "$@"
}
With echo you can't tell the difference between "debug 'foo bar'" and "debug foo bar", but with shell-quote you can.
save a command for later
shell-quote can be used to build up a shell command to run later. Say you want the user to be able to give you switches for a command
you're going to run. If you don't want the switches to be re-evaluated by the shell (which is usually a good idea, else there are
things the user can't pass through), you can do something like this:
user_switches=
while [ $# != 0 ]
do
case x$1 in
x--pass-through)
[ $# -gt 1 ] || die "need an argument for $1"
user_switches="$user_switches "`shell-quote -- "$2"`
shift;;
# process other switches
esac
shift
done
# later
eval "shell-quote some-command $user_switches my args"
OPTIONS
--debug
Turn debugging on.
--help
Show the usage message and die.
--version
Show the version number and exit.
AVAILABILITY
The code is licensed under the GNU GPL. Check http://www.argon.org/~roderick/ or CPAN for updated versions.
AUTHOR
Roderick Schertler <roderick@argon.org>
perl v5.8.4 2005-05-03 SHELL-QUOTE(1p)