Hi,
I have a file such as:
---
>contig00001 length=35524 numreads=2944
gACGCCGCGCGCCGCGGCCAGGGCTGGCCCA
CAGGCCGCGCGGCGTCGGCTGGCTGAG
>contig00002 length=4242 numreads=43423
ATGCCGAAGGTCCGCCTGGGGCTGG
CGCCGGGAGCATGTAGCG
---
I would like to concatenate the lines not starting with ">"... (9 Replies)
Hi everyone,
I have two files (A and B) and want to combine them to one by always taking 10 rows from file A and subsequently 6 lines from file B. This process shall be repeated 40 times (file A = 400 lines; file B = 240 lines).
Does anybody have an idea how to do that using perl, awk or sed?... (6 Replies)
I have following pattern in a file:
00:01:38 UTC
abcd
00:01:48 UTC
00:01:58 UTC
efgh
00:02:08 UTC
00:02:18 UTC
and I need to change something like the following
00:01:38 UTC
abcd
00:01:48 UTC
XXXX
00:01:58 UTC
efgh
00:02:08 UTC
XXXX (6 Replies)
Hi
I have a file like
# vi require.txt
1,BANK,Read blocks that cycle.
yellow
Read blocks.
2,ACCOUNT,Finished
Red
Finished .
3,LOAN, pipe
white
pipe
4,PROFIT,Resolve.
black
Resolve
Am using like
cat require.txt | grep -w ACCOUNTThe output I get is (8 Replies)
I know how to search for a pattern/regular expression in many files that I have in a directory. For example, by doing this:
grep -Ril "News/U.S." .
I can find which files contain the pattern "News/U.S." in a directory.
I am unable to accomplish about how to extend this code so that it can... (1 Reply)
Hi,
I would like to know how to remove lines which has the same pattern as the next line through sed/awk.
Stream 39 (wan stream 7)
Stream 40 (wan stream 8)
WINQ Counter 115955 1 1613
(BYTE) 11204787 163 ... (2 Replies)
In the below file I am trying to grep or similar, all lines where only AF= is less than 0.4.. Thank you :).
grep
grep "AF=" ,+ .4 file
file
12 112036782 . T C 34.0248 PASS ... (3 Replies)
I have a text file with many thousands of lines, a small sample of which looks like this:
InputFile:PS002,003 D -1 5 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 6 6 -1 -1 -1 -1 0 509 0
PS002,003 PSQ 0 1 7 18 1 0 -1 1 1 3 -1 -1 ... (5 Replies)
Discussion started by: jvoot
5 Replies
LEARN ABOUT DEBIAN
gri_merge
GRI_MERGE(1) General Commands Manual GRI_MERGE(1)NAME
gri_merge - merge multiple Gri output files into a single PostScript file.
USAGE (style 1):
gri_merge [OPTIONS] CxR a.ps b.ps ... > merged_file.ps
Merges the files onto one page, in 'C' columns and 'R' rows. The CxR files are given in the order of words on a page. The page is pre-
sumed to be 8.5x11in in size, as are all the input files, and the input files are sized to fit, and kept in natural scale.
USAGE (style 2):
gri_merge [OPTIONS] xcm ycm enlarge a.ps [b.ps ...] > merged_file.ps
Where `enlarge' is a scale factor applied after offsetting `xcm' to the right and `ycm' upward.
EXAMPLE (style 2):
The following
gri_merge 2 12 .5 a.ps
12 12 .5 b.ps
2 2 .5 c.ps
12 2 .5 d.ps > all.ps
produces 4 panels from gri plots done using margins and sizes as specified in the following lines in a gri commandfile
set x margin 2
set x size 15
set y margin 2
set y size 15
The OPTIONS, available if your 'perl' has 'getopts' library, are:
-u graylevel -- set graylevel for underlay beneath panels, by default 0.75.
Values range from 0 (black) to 1 (white), although a value of precisely 1 means do NOT draw underlay.
-b graylevel -- Set value for background under individual panels, again 0
for black to 1 for white, with 1 meaning no drawing.
-h-- Print this help message and quit.
SEE ALSO gri(1), gri_unpage(1)gri_merge 2009 GRI_MERGE(1)