Hi,
I have a file such as:
---
>contig00001 length=35524 numreads=2944
gACGCCGCGCGCCGCGGCCAGGGCTGGCCCA
CAGGCCGCGCGGCGTCGGCTGGCTGAG
>contig00002 length=4242 numreads=43423
ATGCCGAAGGTCCGCCTGGGGCTGG
CGCCGGGAGCATGTAGCG
---
I would like to concatenate the lines not starting with ">"... (9 Replies)
Hi everyone,
I have two files (A and B) and want to combine them to one by always taking 10 rows from file A and subsequently 6 lines from file B. This process shall be repeated 40 times (file A = 400 lines; file B = 240 lines).
Does anybody have an idea how to do that using perl, awk or sed?... (6 Replies)
I have following pattern in a file:
00:01:38 UTC
abcd
00:01:48 UTC
00:01:58 UTC
efgh
00:02:08 UTC
00:02:18 UTC
and I need to change something like the following
00:01:38 UTC
abcd
00:01:48 UTC
XXXX
00:01:58 UTC
efgh
00:02:08 UTC
XXXX (6 Replies)
Hi
I have a file like
# vi require.txt
1,BANK,Read blocks that cycle.
yellow
Read blocks.
2,ACCOUNT,Finished
Red
Finished .
3,LOAN, pipe
white
pipe
4,PROFIT,Resolve.
black
Resolve
Am using like
cat require.txt | grep -w ACCOUNTThe output I get is (8 Replies)
I know how to search for a pattern/regular expression in many files that I have in a directory. For example, by doing this:
grep -Ril "News/U.S." .
I can find which files contain the pattern "News/U.S." in a directory.
I am unable to accomplish about how to extend this code so that it can... (1 Reply)
Hi,
I would like to know how to remove lines which has the same pattern as the next line through sed/awk.
Stream 39 (wan stream 7)
Stream 40 (wan stream 8)
WINQ Counter 115955 1 1613
(BYTE) 11204787 163 ... (2 Replies)
In the below file I am trying to grep or similar, all lines where only AF= is less than 0.4.. Thank you :).
grep
grep "AF=" ,+ .4 file
file
12 112036782 . T C 34.0248 PASS ... (3 Replies)
I have a text file with many thousands of lines, a small sample of which looks like this:
InputFile:PS002,003 D -1 5 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 6 6 -1 -1 -1 -1 0 509 0
PS002,003 PSQ 0 1 7 18 1 0 -1 1 1 3 -1 -1 ... (5 Replies)
Discussion started by: jvoot
5 Replies
LEARN ABOUT NETBSD
merge
MERGE(1) General Commands Manual MERGE(1)NAME
merge - three-way file merge
SYNOPSIS
merge [ options ] file1 file2 file3
DESCRIPTION
merge incorporates all changes that lead from file2 to file3 into file1. The result ordinarily goes into file1. merge is useful for com-
bining separate changes to an original. Suppose file2 is the original, and both file1 and file3 are modifications of file2. Then merge
combines both changes.
A conflict occurs if both file1 and file3 have changes in a common segment of lines. If a conflict is found, merge normally outputs a
warning and brackets the conflict with and lines. A typical conflict will look like this:
file A
lines in file A
=======
lines in file B
file B
If there are conflicts, the user should edit the result and delete one of the alternatives.
OPTIONS -A Output conflicts using the -A style of diff3(1), if supported by diff3. This merges all changes leading from file2 to file3 into
file1, and generates the most verbose output.
-E, -e These options specify conflict styles that generate less information than -A. See diff3(1) for details. The default is -E. With
-e, merge does not warn about conflicts.
-L label
This option may be given up to three times, and specifies labels to be used in place of the corresponding file names in conflict
reports. That is, merge -L x -L y -L z a b c generates output that looks like it came from files x, y and z instead of from files
a, b and c.
-p Send results to standard output instead of overwriting file1.
-q Quiet; do not warn about conflicts.
-V Print version number.
DIAGNOSTICS
Exit status is 0 for no conflicts, 1 for some conflicts, 2 for trouble.
IDENTIFICATION
Author: Walter F. Tichy.
Manual Page Revision: ; Release Date: .
Copyright (C) 1982, 1988, 1989 Walter F. Tichy.
Copyright (C) 1990, 1991, 1992, 1993, 1994, 1995 Paul Eggert.
SEE ALSO diff3(1), diff(1), rcsmerge(1), co(1).
BUGS
It normally does not make sense to merge binary files as if they were text, but merge tries to do it anyway.
GNU MERGE(1)