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Top Forums UNIX for Dummies Questions & Answers How do I find the correct environment variables for MPI? Post 302469195 by EinsteinMcfly on Friday 5th of November 2010 11:36:52 AM
Old 11-05-2010
How do I find the correct environment variables for MPI?

Hello all. I've been trying to install NWCHEM in parallel on a new cluster, and have been able to get it to work on single processors by ignoring any MPI environment variables.

This is, of course, pretty worthless. So I'm starting over and trying to get thing set up right for the MPI. The key variables are:
Code:
 USE_MPI="y"
MPI_LIB="/usr/lib64"
#  LIBMPI="/usr/lib64/OMPI/pgi/libmpi.so" ; export LIBMPI
MPI_INCLUDE="/usr/include"
USE_MPIF="y"

As far as I can tell, the MPI_INCLUDE is supposed to be the place where the mpi.h and/or mpif.h are which I think I have correctly. Also, the MPI_LIB is mean to have all of the libmpixxxxxetc, right? That leaves LIBMPI,which I THOUGH was supposed to be the location of the libmpi.so file, but when I set it that way and try to compile I get:
Code:
File with unknown suffix passed to linker: /usr/lib64/OMPI/pgi
/usr/lib64/OMPI/pgi: file not recognized: Is a directory
make: *** [all] Error 2

I get this error whether I include the "libmpi.so" part in the path or not. It appears that it's not finding what it needs in that folder, but then what is it that it's supposed to find?

Thanks for any help.

EMF

---------- Post updated 11-05-10 at 10:36 AM ---------- Previous update was 11-04-10 at 11:58 PM ----------

Sorry for the lack of proper code.

Is this in the correct forum? Is there a parallel forum that I'm missing?

Last edited by pludi; 11-05-2010 at 03:15 AM.. Reason: code tags, please...
 

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MPI_Abort(3OpenMPI)													       MPI_Abort(3OpenMPI)

NAME
MPI_Abort - Terminates MPI execution environment. SYNTAX
C Syntax #include <mpi.h> int MPI_Abort(MPI_Comm comm, int errorcode) Fortran Syntax INCLUDE 'mpif.h' MPI_ABORT(COMM, ERRORCODE, IERROR) INTEGER COMM, ERRORCODE, IERROR C++ Syntax #include <mpi.h> void Comm::Abort(int errorcode) INPUT PARAMETERS
comm Communicator of tasks to abort. errorcode Error code to return to invoking environment. OUTPUT PARAMETER
IERROR Fortran only: Error status (integer). DESCRIPTION
This routine makes a "best attempt" to abort all tasks in the group of comm. This function does not require that the invoking environment take any action with the error code. However, a UNIX or POSIX environment should handle this as a return errorcode from the main program or an abort (errorcode). The Open MPI implementation terminates all processes in all tasks that contain a process in comm, and the error code is not returned to the invoking environment. Note: All associated processes are sent a SIGTERM. ERRORS
Almost all MPI routines return an error value; C routines as the value of the function and Fortran routines in the last argument. C++ func- tions do not return errors. If the default error handler is set to MPI::ERRORS_THROW_EXCEPTIONS, then on error the C++ exception mechanism will be used to throw an MPI:Exception object. Before the error value is returned, the current MPI error handler is called. By default, this error handler aborts the MPI job, except for I/O function errors. The error handler may be changed with MPI_Comm_set_errhandler; the predefined error handler MPI_ERRORS_RETURN may be used to cause error values to be returned. Note that MPI does not guarantee that an MPI program can continue past an error. Open MPI 1.2 September 2006 MPI_Abort(3OpenMPI)
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