Hello Awk Gurus,
Can anyone of you help me with the below problem. I have got a file having data in below format
pmFaultyTransportBlocks
-----------------------
9842993
pmFrmNoOfDiscRachFrames
-----------------------
NULL
pmNoRecRandomAccSuccess
-----------------------... (4 Replies)
Hi guys
task removing the last commas of 5th and 6th columns. The bug in the script is causing effect because of whitespaces around commas. I tried to delete white spaces first and running the above script. but still some where getting the results wrong.
I already have a script to do this... (12 Replies)
1. The problem statement, all variables and given/known data:
Problem Statement for project:
When an account is created on the CS Unix network, a
public html directory is created in the account's home directory. A default web page is put into that directory.
Some users replace or... (13 Replies)
Hi all,
I have a conf file, i want to update some entries in that conf file. Below is the code for that using a temporary file.
sed '/workgroup=/ c\workgroup=Workgroup' /usr/local/netx.conf > /usr/local/netx.conf.tmp
mv -f /usr/local/netx.conf.tmp /usr/local/netx.conf
Sample contents of... (9 Replies)
I have two files which I would like to compare and then manipulate in a way.
File1:
pictures.txt 1.1 1.3
dance.txt 1.2 1.4
treehouse.txt 1.3 1.5
File2:
pictures.txt 1.5 ref2313 1.4 ref2345 1.3 ref5432 1.2 ref4244
dance.txt 1.6 ref2342 1.5 ref2352 1.4 ref0695 1.3 ref5738 1.2... (1 Reply)
Hello,
i have a file, i open the file and read the line, i want to get the first item in the csv file and also teh third+6 item and wirte it to a new csv file. only problem is that using echo it takes TOO LONG:
please help a newbie. below is my code:
WorkingDir=$1
FileName=`cut -d ',' -f... (2 Replies)
Hello all, I need some help with sed. seems like i cant get through it. So here is what i am trying. when i do ps -ef|grep bla blah ...like below...i get /u01/app/oracle/11g/bin/tnslsnr .... but i want to replace that string with something using sed. So basically i want to get rid of... (3 Replies)
With sed
1. I need to find a line that contains "DVM" and "73069".
2. I need to insert a double quote at the beginning of the first line of the file.
These two have been driving me crazy for the last 45 minutes. Any help would be greatly appreciated.
Thanks (3 Replies)
HI All,
I am new to unix. I have a file would like to do some editing by using awk, cut and sed. Could anyone help?
This file contain 100 lines. There are one line for example:
2,"102343454",5060,"579668","579668","579668","SIP",,,"825922","035885221283026",1,268,"00:59:00.782 APR 17... (2 Replies)
{
"AFafa": "FAFA","AFafa": "FAFA"
"baseball":"soccer","wrestling":"dancing"
"rhinos":"crocodiles","roles":"foodchain"
}
I need to insert a new line before the closing brackets "}" so that the final output looks like this:
{
"AFafa": "FAFA","AFafa": "FAFA"... (6 Replies)
Discussion started by: SkySmart
6 Replies
LEARN ABOUT DEBIAN
bio::updateableseqi
Bio::UpdateableSeqI(3pm) User Contributed Perl Documentation Bio::UpdateableSeqI(3pm)NAME
Bio::UpdateableSeqI - Descendant of Bio::SeqI that allows updates
SYNOPSIS
See Bio::SeqI for most of the documentation. See the documentation of the methods for further details.
DESCRIPTION
Bio::UpdateableSeqI is an interface for Sequence objects which are expected to allow users to perform basic editing functions
(update/delete) on their component SeqFeatures.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - David Block
Email dblock@gene.pbi.nrc.ca
CONTRIBUTORS
Ewan Birney forced me to this...
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
delete_feature
Title : delete_feature
Usage : my $orphanlist=$self->delete_feature($feature,$transcript,$gene);
Function: deletes the specified $feature from the given transcript, if $transcript is sent and exists and $feature is a feature of $transcript,
or from $gene if the $feature is a feature of $gene, or from $self if $transcript and $gene are not sent. Keeps track of the features
of the $gene object that may be left as orphans and returns them as a listref.
Example : I want to delete transcript 'abc' of gene 'def', with three exons, leaving only transcript 'ghi' with two exons.
This will leave exons 1 and 3 part of 'ghi', but exon 2 will become an orphan.
my $orphanlist=$seq->delete_feature($transcript{'abc'},undef,$gene{'def'});
$orphanlist is a reference to a list containing $exon{'2'};
Returns : a listref of orphaned features after the deletion of $feature (optional)
Args : $feature - the feature to be deleted
$transcript - the transcript containing the $feature, so that a $feature can be removed from only one transcript when there are multiple
transcripts in a gene.
$gene - the gene containing the $transcript and/or the $feature
perl v5.14.2 2012-03-02 Bio::UpdateableSeqI(3pm)