10-26-2010
Comm uses TAB(\t) as a default output delimiter, so this will make sure awk gets the right output in the right column. This will work if the originating files do not use TAB as a separator. If that is the case then you need to select a different output separator for comm and use the same for awk. In the example you posted there appeared to be spaces between the fields and using that I got the correct result. Did you test with the option -F"\t" ?
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COMM(1) User Commands COMM(1)
NAME
comm - compare two sorted files line by line
SYNOPSIS
comm [OPTION]... FILE1 FILE2
DESCRIPTION
Compare sorted files FILE1 and FILE2 line by line.
When FILE1 or FILE2 (not both) is -, read standard input.
With no options, produce three-column output. Column one contains lines unique to FILE1, column two contains lines unique to FILE2, and
column three contains lines common to both files.
-1 suppress column 1 (lines unique to FILE1)
-2 suppress column 2 (lines unique to FILE2)
-3 suppress column 3 (lines that appear in both files)
--check-order
check that the input is correctly sorted, even if all input lines are pairable
--nocheck-order
do not check that the input is correctly sorted
--output-delimiter=STR
separate columns with STR
--total
output a summary
-z, --zero-terminated
line delimiter is NUL, not newline
--help display this help and exit
--version
output version information and exit
Note, comparisons honor the rules specified by 'LC_COLLATE'.
EXAMPLES
comm -12 file1 file2
Print only lines present in both file1 and file2.
comm -3 file1 file2
Print lines in file1 not in file2, and vice versa.
AUTHOR
Written by Richard M. Stallman and David MacKenzie.
REPORTING BUGS
GNU coreutils online help: <http://www.gnu.org/software/coreutils/>
Report comm translation bugs to <http://translationproject.org/team/>
COPYRIGHT
Copyright (C) 2017 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law.
SEE ALSO
join(1), uniq(1)
Full documentation at: <http://www.gnu.org/software/coreutils/comm>
or available locally via: info '(coreutils) comm invocation'
GNU coreutils 8.28 January 2018 COMM(1)