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Full Discussion: Append text from one file to another based on a search from the end of a document
Top Forums Shell Programming and Scripting Append text from one file to another based on a search from the end of a document Post 302464646 by marcozd on Wednesday 20th of October 2010 04:10:07 PM
Old 10-20-2010
Question Append text from one file to another based on a search from the end of a document
Hi all,

I have output files that are all text files with various different extensions.

So, if I submit the input file "job_name.inp", when it finishes I get an output file "job_name.dat". A typical input file looks something like this:

Code:
 $CONTRL SCFTYP=RHF RUNTYP=ENERGY MAXIT=199 MULT=1 NOSYM=1
  $END
 $SYSTEM TIMLIM=2800 MWORDS=20 MEMDDI=50 PARALL=.TRUE. $END
 $GUESS GUESS=HCORE $END
 $SCF DIRSCF=.TRUE. FDIFF=.f. DIIS=.T. SOSCF=.F. DAMP=.T. $END
 $STATPT OPTTOL=0.00001 NSTEP=500  $END
 $FORCE TEMP=298.15 PURIFY=.t. PROJCT=.t. $END
 $DATA
 MoX6
C1
MOLYBDENUM 42.0     -0.0064896473      0.0000000000     -0.0299719236
S   3
  1      2.3610000             -0.9121760        
  2      1.3090000              1.1477453        
  3      0.4500000              0.6097109        
S   4
  1      2.3610000              0.8139259        
  2      1.3090000             -1.1360084        
  3      0.4500000             -1.1611592        
  4      0.1681000              1.0064786        
S   1
  1      0.0423000              1.0000000        
P   3
  1      4.8950000             -0.0908258        
  2      1.0440000              0.7042899        
  3      0.3877000              0.3973179        
P   2
  1      0.4995000             -0.1081945        
  2      0.0780000              1.0368093        
P   1
  1      0.0247000              1.0000000        
D   3
  1      2.9930000              0.0527063        
  2      1.0630000              0.5003907        
  3      0.3721000              0.5794024        
D   1
  1      0.1178000              1.0000000        
 
 $END

To run other types of jobs, I need to extract and append a portion of text that is in the "job_name.dat" file directly at the end of the text in the "job_name.inp" file directly below the "$END".

The text that needs to be appended is sandwiched between a line that contains only "$HESS" (which indicates the begining of the block of text that needs to be appended) and a line that contains only "$END".

Here is a shortened version of what it looks like:

Code:
 $HESS
ENERGY IS     -564.2186882597 E(NUC) IS      515.5174532336
 1  1 2.81829118E-01 1.96516215E-02 4.20602780E-02-4.88781528E-02 1.17369706E-02
 1  2-2.64287926E-02-7.58478386E-02-2.07409567E-03-1.79893671E-02-4.10847462E-02
 1  3 4.12539079E-03-1.47014988E-03-9.06341578E-02-1.93280378E-02 1.03405906E-02
 1  4-1.80442057E-02-2.76602476E-02 4.37651343E-03 1.11643572E-02 3.21356156E-03
.
.
.
$END

The trouble is that there are a number of these blocks of text that are delineated by "$HESS" and "$END".

The number of "$HESS" blocks of text varies between files unfortunately. The correct block is the very last one in the "job_input.dat" file.

Is there a way to use maybe awk for this but search backwards from the end of the document up?

Thanks in advance for any help with this!
 

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LEARN ABOUT DEBIAN

tau_profile_set_context

TAU_PROFILE_SET_CONT(3) 				      TAU Instrumentation API					   TAU_PROFILE_SET_CONT(3)

NAME

       TAU_PROFILE_SET_CONTEXT - Informs the measurement system of the context id

SYNOPSIS

       C/C++:

       TAU_PROFILE_SET_CONTEXT(int context);

       Fortran:

       TAU_PROFILE_SET_CONTEXT(integer context);

DESCRIPTION

       The TAU_PROFILE_SET_CONTEXT macro sets the context identifier of the executing task for profiling and tracing. Tasks are identified using
       context, context and thread ids. The profile data files generated will accordingly be named profile.<context>.<context>.<thread>. Note that
       it is not necessary to call TAU_PROFILE_SET_CONTEXT when using the TAU MPI wrapper library.

EXAMPLE

       C/C++ :

       int main (int argc, char **argv) {
	 int ret, i;
	 pthread_attr_t  attr;
	 pthread_t	 tid;
	 TAU_PROFILE_TIMER(tautimer,"main()", "int (int, char **)",
			   TAU_DEFAULT);
	 TAU_PROFILE_START(tautimer);
	 TAU_PROFILE_INIT(argc, argv);
	 TAU_PROFILE_SET_NODE(0);
	 TAU_PROFILE_SET_CONTEXT(1);
	 /* ... */
	 TAU_PROFILE_STOP(tautimer);
	 return 0;
       }

       Fortran :

	    PROGRAM SUM_OF_CUBES
	      integer profiler(2) / 0, 0 /
	       save profiler
	     INTEGER :: H, T, U
	       call TAU_PROFILE_INIT()
	       call TAU_PROFILE_TIMER(profiler, 'PROGRAM SUM_OF_CUBES')
	       call TAU_PROFILE_START(profiler)
	       call TAU_PROFILE_SET_NODE(0)
	       call TAU_PROFILE_SET_CONTEXT(1)
	     ! This program prints all 3-digit numbers that
	     ! equal the sum of the cubes of their digits.
	     DO H = 1, 9
	       DO T = 0, 9
		 DO U = 0, 9
		 IF (100*H + 10*T + U == H**3 + T**3 + U**3) THEN
		    PRINT "(3I1)", H, T, U
		 ENDIF
		 END DO
	       END DO
	     END DO
	     call TAU_PROFILE_STOP(profiler)
	     END PROGRAM SUM_OF_CUBES

SEE ALSO

       TAU_PROFILE_SET_NODE(3)

								    08/31/2005						   TAU_PROFILE_SET_CONT(3)
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