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Top Forums Shell Programming and Scripting Need help line 35: syntax error: unexpected end of file only 34 lines of code Post 302462592 by durden_tyler on Thursday 14th of October 2010 02:33:27 PM
Old 10-14-2010
The "EOF" at both the places should begin at column number 1.

The script works in Cygwin Bash if that is fixed.

Code:
$
$
$ cat -n f34
     1  #!/bin/bash
     2  VUE_SEND_DIR=/blah/send
     3  VUE_GET_DIR=/blah/receive
     4  LC_GET_DIR=/usr/public/blah/blah/CDK/get
     5  LC_SEND_DIR=/usr/public/blah/blah/CDK/send
     6
     7
     8  PS3='Let me know what you would like to do'
     9  LIST="Pull Send EXIT"
    10  select OPT in $LIST
    11  do
    12  if [ $OPT = "Pull" ] &> /dev/null
    13  then
    14  sftp blah@sftp.blah.com <<EOF
    15
    16          cd $VUE_SEND_DIR
    17          lcd $LC_GET_DIR
    18          mget *
    19          exit
    20      EOF
    21  elif [ $OPT = "Send" ] &> /dev/null
    22  then
    23  sftp blah@sftp.blah.com <<EOF
    24
    25          cd $VUE_GET_DIR
    26          lcd $LC_SEND_DIR
    27          mget *
    28          exit
    29      EOF
    30  elif [ $OPT = "END" ] &> /dev/null
    31  then
    32  exit 0
    33  fi
    34  done
$
$ ./f34
./f34: line 35: syntax error: unexpected end of file
$
$
$ # after editing lines 20 and 29 of the script
$
$ cat -n f34
     1  #!/bin/bash
     2  VUE_SEND_DIR=/blah/send
     3  VUE_GET_DIR=/blah/receive
     4  LC_GET_DIR=/usr/public/blah/blah/CDK/get
     5  LC_SEND_DIR=/usr/public/blah/blah/CDK/send
     6
     7
     8  PS3='Let me know what you would like to do'
     9  LIST="Pull Send EXIT"
    10  select OPT in $LIST
    11  do
    12  if [ $OPT = "Pull" ] &> /dev/null
    13  then
    14  sftp blah@sftp.blah.com <<EOF
    15
    16          cd $VUE_SEND_DIR
    17          lcd $LC_GET_DIR
    18          mget *
    19          exit
    20  EOF
    21  elif [ $OPT = "Send" ] &> /dev/null
    22  then
    23  sftp blah@sftp.blah.com <<EOF
    24
    25          cd $VUE_GET_DIR
    26          lcd $LC_SEND_DIR
    27          mget *
    28          exit
    29  EOF
    30  elif [ $OPT = "END" ] &> /dev/null
    31  then
    32  exit 0
    33  fi
    34  done
$
$ ./f34
1) Pull
2) Send
3) EXIT
Let me know what you would like to do<CTRL+C>
$
$

tyler_durden
 

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fastautils(1)					     FASTA format file manipulation utilities					     fastautils(1)

NAME
fastautils - FASTA format file manipulation utilities SYNOPSIS
fastachecksum [ options ] <input file> fastaclean fastaclip fastacomposition fastadiff fastaexplode fastafetch fastahardmask fastaindex fastalength fastanrdb fastaoverlap fastareformat fastaremove fastarevcomp fastasoftmask fastasort fastasplit fastasubseq fastatranslate fastavalidcds DESCRIPTION
These are utilities for the manipulation of FASTA format sequence databases which are distributed with the exonerate sequence alignment program. ENVIRONMENT
Not documented yet. EXAMPLES
fastalength sequence.fasta blah blah VERSION
This documentation accompanies version 2.2.0 of the exonerate package. AUTHOR
Guy St.C. Slater. <guy@ebi.ac.uk>. See the AUTHORS file accompanying the source code for a list of contributors. AVAILABILITY
This source code for the exonerate package is available under the terms of the GNU general public licence. Please see the file COPYING which was distrubuted with this package, or http://www.gnu.org/licenses/gpl.txt for details. This package has been developed as part of the ensembl project. Please see http://www.ensembl.org/ for more information. SEE ALSO
exonerate(1),e-PCR fastautils March 2003 fastautils(1)
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