10-06-2010
Shell scripting : pls help me
I have an input file in this format (shown below). I have to select the lines which doesnt followed by 'miR-" and to save such lines into an output file. For easy identification they are shown here in blue color. They have to be selected. Pls. help me to write a shell script to select those lines which doesnt followed by miR- and have to write them in a file.
KINDLY DO THE HELP
>sample1:1:1:1056:8164#0 1 1
miR-184;Chr21:25913771-25913853 +52 2
>sample1:1:1:1057:7503#0 0 0
>sample1:1:1:1057:18666#0 1 1
miR-184;Chr21:25913771-25913853 +52 2
>sample1:1:1:1057:1725#0 1 1
miR-184;Chr21:25913771-25913853 +52 2
>sample1:1:1:1057:12664#0 0 0
>sample1:1:1:1057:18537#0 1 1
miR-184;Chr21:25913771-25913853 +52 2
>sample1:1:1:1058:8130#0 1 1
miR-2396;Chr26:42482649-42482717 -1 2
>sample1:1:1:1058:19619#0 1 1
miR-184;Chr21:25913771-25913853 +52 2
>sample1:1:1:1059:6357#0 0 0
>sample1:1:1:1059:10418#0 0 0
>sample1:1:1:1059:12084#0 1 1
miR-16-1;Chr12:19596200-19596290 -52 2
>sample1:1:1:1060:13498#0 1 1
miR-184;Chr21:25913771-25913853 +52 2
>sample1:1:1:1060:11510#0 0 0
>sample1:1:1:1060:2691#0 1 1
miR-184;Chr21:25913771-25913853 +52 2
>sample1:1:1:1060:5177#0 0 0
>sample1:1:1:1060:13599#0 1 1
miR-16-1;Chr12:19596200-19596290 -52 2
>sample1:1:1:1060:12022#0 1 1
miR-184;Chr21:25913771-25913853 +52 2
>sample1:1:1:1061:8105#0 0 0
>sample1:1:1:1062:4635#0 1 1
miR-184;Chr21:25913771-25913853 +52 2
>sample1:1:1:1062:2052#0 1 1
miR-184;Chr21:25913771-25913853 +52 2
>sample1:1:1:1062:17129#0 1 1
miR-184;Chr21:25913771-25913853 +52 2
>sample1:1:1:1063:6105#0 0 0
>sample1:1:1:1064:11266#0 0 0
>sample1:1:1:1065:5224#0 1 1
miR-184;Chr21:25913771-25913853 +52 2
>sample1:1:1:1065:14605#0 1 1
miR-152;Chr19:39081165-39081250 +53 2
>sample1:1:1:1066:5654#0 0 0
>sample1:1:1:1066:10310#0 1 1
miR-184;Chr21:25913771-25913853 +52 2
>sample1:1:1:1067:3521#0 1 1
miR-184;Chr21:25913771-25913853 +52 2
>sample1:1:1:1067:1055#0 1 1
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
can someone pls help me with the script for a files coming from one system to a particular directory and i want to write a script to move those files to another directory on different system by renaming the files...
pls someone help me on this...
thanking in anticipation.... (1 Reply)
Discussion started by: thatiprashant
1 Replies
2. Shell Programming and Scripting
please give the difference between AIX shell scripting and Unix shell scripting. (2 Replies)
Discussion started by: haroonec
2 Replies
3. Shell Programming and Scripting
this is my script....
SQL> select * from dba_profiles
2 where resource_name in ('FAILED_LOGIN_ATTEMPTS','PASSWORD_LOCK_TIME')
3 order by profile;
and this is the output...
PROFILE RESOURCE_NAME RESOURCE... (2 Replies)
Discussion started by: liezer
2 Replies
4. Shell Programming and Scripting
Dear All,
forgive me as i am a complete beginner in shell scripting in UNIX.
I have a file with data similair to the following
8 McDonalds Sandwich 1.99
9 Mcdonalds Fries 1.20
13 McDonalds Milkshake 1.20
7 ... (9 Replies)
Discussion started by: Mary_xxx
9 Replies
5. Shell Programming and Scripting
hi..
I want to customize a user in unix which could have only ftp access and NO TELNET ACCESS! .....
As being a newbie to unix to my understanding the user .profile has to be edited but if someone can explain how to edit it so that i can block telnet access for that user.....Is /etc/profile has... (5 Replies)
Discussion started by: rookie250
5 Replies
6. UNIX for Advanced & Expert Users
i want to write a script that if the time is 8 then it give a message that the time is 8 and if it is 9-10 then it gives a message that time to go to office like that.
can any one help me? (3 Replies)
Discussion started by: lakshmananindia
3 Replies
7. Shell Programming and Scripting
# for i in `cat oo`;do ls -ld $i;done
ls: /var/tmp/i: No such file or directory
ls: i: No such file or directory
ls: /var/tmp/ii: No such file or directory
ls: i: No such file or directory
ls: /var/tmp/iii: No such file or directory
ls: i: No such file or directory
ls: /var/tmp/iiii: No such... (2 Replies)
Discussion started by: cpttak
2 Replies
8. Shell Programming and Scripting
Hi Experts,
I am adding a column of numbers with awk , however not getting correct output:
# awk '{sum+=$1} END {print sum}' datafile
2.15291e+06
How can I getthe output like : 2152910
Thank you..
# awk '{sum+=$1} END {print sum}' datafile
2.15079e+06 (3 Replies)
Discussion started by: rveri
3 Replies
9. Shell Programming and Scripting
first queestion
if
what does "-s" mean?
second
seqx -n 10000000 -c 10 < $seqfile >$temp
seqx? -n? -c? what do these mean?
third
if && ! cmp -s $missing $temp
explain these codes
ty (2 Replies)
Discussion started by: imtheone
2 Replies
10. Shell Programming and Scripting
Hi,
I'm trying to extract information from one file to update another one and am a bit stuck.
the first file is made up of tags e.g.
<item>a@b.com</item>
jksdhfjkdsh sldkjfds l klsjdf
<item> c@d.com </item>
what i'd like to do is extract the email addresses between these tags,... (6 Replies)
Discussion started by: newb1000
6 Replies
LEARN ABOUT DEBIAN
colorgccrc
COLORGCCRC(5) File Formats Manual COLORGCCRC(5)
NAME
colorgccrc - configuration file for colorgcc
DESCRIPTION
A colorgccrc configuration file is used to configure the highlighting of the compiler output from colorgcc.
SYNTAX
Each line consists of a keyword designating a configuration variable. The keyword is followed by `:' and then one or several values
(depending on the keyword). Lines beginning with a hash mark `#' are comments.
CONFIGURATION VARIABLES
g++ | gcc | c++ | cc | g77 | gcj | gnat | gpc
Specifies the paths to the compilers. Takes one value; a path to the compiler.
nocolor
Specifies what terminal types colorization should be disabled on. Takes one or several values, separated by whitespace.
srcColor
Specifies the highlighting attributes source-code should be given. Takes one or several color attributes. See the section COLOR
ATTRIBUTES for more information.
introColor
Specifies the highlighting attributes for normal compiler output. Takes one or several color attributes. See the section COLOR
ATTRIBUTES for more information.
warningFileNameColor | errorFileNameColor
Specifies the highlighting attributes for the filename in a warning or an error, respectively. Takes one or several color
attributes. See the section COLOR ATTRIBUTES for more information.
warningNumberColor | errorNumberColor
Specifies the highlighting attributes for the line-number in a warning or an error, respectively. Takes one or several color
attributes. See the section COLOR ATTRIBUTES for more information.
warningMessageColor | errorMessageColor
Specifies the highlighting attributes for the message-text in a warning or an error, respectively. Takes one or several color
attributes. See the section COLOR ATTRIBUTES for more information.
COLOR ATTRIBUTES
The following attributes are valid for highlighting.
clear, reset
bold, underline, underscore, blink, reverse, concealed
black, red, green, yellow, blue, magenta, cyan, white
on_black, on_red, on_green, on_yellow, on_blue, on_magenta, on_cyan, on_white
SEE ALSO
gcc(1), colorgcc(1)
HISTORY
Jan 15 2003: Initial version of this manual-page.
REPORTING BUGS
Report bugs to <jmoyers@geeks.com>
AUTHORS
Jamie Moyers <jmoyers@geeks.com> is the author of colorgcc.
This manual page was written by Joe Wreschnig <piman@sacredchao.net>, and modified by David Weinehall <tao@debian.org>, for the Debian
GNU/Linux system (but may be used by others).
COPYRIGHT
Copyright (C) 2003 Jamie Moyers
This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICU-
LAR PURPOSE.
Jan 15, 2003 COLORGCCRC(5)