BIORUBY(1)						      General Commands Manual							BIORUBY(1)

NAME

       br_bioflat.rb -- OBDA flat file indexer

SYNOPSIS

       Search:

       br_bioflat.rb [--search]  [options...]

       br_bioflat.rb [--search]  [--location DIR]  [--dbname DBNAME]  [options...]  [KEYWORDS]

       Create index:

       br_bioflat.rb [--create]  [--location DIR]  [--dbname DBNAME]  [--format genbank|embl|fasta]  [options...]  [--files FILES...]

       Update index:

       br_bioflat.rb [--update]  [--location DIR]  [--dbname DBNAME]  [options...]  [--files FILES...]

       Show namespaces:

       br_bioflat.rb [--show-namespaces]  [--location DIR]  [--dbname DBNAME]  [DIR/DBNAME]

       br_bioflat.rb [--show-namespaces]  [--format=CLASS]

       br_bioflat.rb [--show-namespaces]  [--files file]

DESCRIPTION

       This manual page documents briefly the br_bioflat.rb.

       br_bioflat.rb is an OBDA flat file indexer.

OPTIONS

       --search  Search a database for keywords.

       --namespace	   --name
		 Only  valid  with the --search option. Set the search namespace.  You can set this option multiple times to specify more than one
		 namespace.

       --create  Create an index.

       --location
		 Specify the directory.

       --dbname  Specify the name of the database.

       --primary	   --secondary
		 Set the primary and secondarynamespace of the index. Default primary/secondary namespaces depend on the format of the	flatfiles.
		 Only valid with the --create option.

       --add-secondary
		 Add secondary namespaces to the default specification. You can use this option many times. Only valid with the --create option.

       --update  Update an index

       --sort	 Sort  an index. You can set this to a path to an external sorting program, or BUILTIN to use the builtin sort module. This option
		 is only valid with --create (or --update) and --type flat options.

       --renew	 Re-read all flatfiles and update whole index. This option is only valid with the --update option.

       --show-namespaces
		 Display the namespaces for an index file.

AUTHOR

       This manual page was written by David Nusinow dnusinow@debian.org for the Debian system (but may be used by others).  Permission is granted
       to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
       the Free Software Foundation.

       On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.

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