I can't think of an uncomplicated method when we don't seem to have the "stat" command in MACOS to find out the precise timestamp of a file.
Other correspondents may have a method.
Here are the seeds of an idea using the "-ot" and "-nt" shell operators.
The script deduces that a file has the same timestamp as a reference file.
For test purposes we first create two files with the same timestamp.
Last edited by methyl; 09-17-2010 at 12:48 PM..
Reason: layout
Hello,
I create a file touch 1201093003 fichcomp
and inside a repertory (which hava a lot of files) I want to list all files created before this file :
find *.* \! -maxdepth 1 - newer fichcomp but this command returned bash: /usr/bin/find: Argument list too long
but i make a filter all... (1 Reply)
Yes , I have to find a file in unix without using any find or where commands.Any pointers for the same would be very helpful as i am beginner in shell scritping and need a solution for the same.
Thanks in advance.
Regards
Jatin Jain (10 Replies)
I need to find whether there is a file named vijay is there or not in folder named "opt" .I tried "ls *|grep vijay" but it showed permission problem.
so i need to use find command (6 Replies)
I am using csh and getting the error "find: No match." but I cannot figure out why. What I am trying to do is set the find command to a variable and then execute the variable as a command. I ran it through a debugger and it looks like $FIND is getting set but the find command can not actually be... (2 Replies)
Hello everyone,
first post here, trying to learn scripting on my own and this forum as been really helpful so far. I made few little scripts working great but I m facing some problems with RE.
I have a bunch of files in many subdirectories called *001.ext *002.ext OR simple *.ext or *01.ext... (7 Replies)
Hi all ,
I'm new to unix
I have a checked project , there exists a file called xxx.config .
now my task is to find all the files in the checked out project which references to this xxx.config file.
how do i use grep or find command . (2 Replies)
Hello,
I am running some performance based tests on Solaris, and I was wondering how fast the "seeking" rate of Solaris is, or how fast Solaris can get information about files with the "find" command. Does anyone know what 'find' command I could run to traverse through my system to see the rate... (1 Reply)
Discussion started by: bstring
1 Replies
LEARN ABOUT DEBIAN
probcons
PROBCONS(1) Probcons Manual PROBCONS(1)NAME
probcons - align multiple protein sequences and print to standard output
SYNOPSIS
probcons [OPTION] [MFAFILE] [MFAFILE]
DESCRIPTION
probcons is a tool for generating multiple alignments of protein sequences. Using a combination of probabilistic modeling and
consistency-based alignment techniques, PROBCONS has achieved the highest accuracies of all alignment methods to date. On the BAliBASE
benchmark alignment database, alignments produced by PROBCONS show statistically significant improvement over current programs, containing
an average of 7% more correctly aligned columns than those of T-Coffee, 11% more correctly aligned columns than those of CLUSTAL W, and 14%
more correctly aligned columns than those of DIALIGN.
probcons aligns sequences provided in MFA format. This format consists of multiple sequences. Each sequence in MFA format begins with a
single-line description, followed by lines of sequence data. The description line is distinguished from the sequence data by a greater-than
(">") symbol in the first column.
OPTIONS -clustalw
use CLUSTALW output format instead of MFA
-c --consistency REPS
use 0 <= REPS <= 5 (default: 2) passes of consistency transformation
-ir --iterative-refinement REPS
use 0 <= REPS <=1000 (default: 100) passes of iterative-refinement
-pre --pre-training REPS
use 0 <= REPS <= 20 (default: 0) rounds of pretraining
-pairs
generate all-pairs pairwise alignments
-viterbi
use Viterbi algorithm to generate all pairs (automatically enables -pairs)
-v --verbose
Report progress while aligning (default: off)
-annot FILENAME
write annotation for multiple alignment to FILENAME
-t --train FILENAME
compute EM transition probabilities, store in FILENAME (default: no training)
-e --emissions
also reestimate emission probabilities (default: off)
-p --paramfile FILENAME
read parameters from FILENAME (default: )
-a --alignment-order
print sequences in alignment order rather than input order (default: off)
SEE ALSO
o You can find more information in the manual of ProbCons, which is located in /usr/share/doc/probcons/manual.pdf in Debian systems.
o An experimental version of ProbCons compiled with parameters estimated via unsupervised training on BRAliBASE, probcons-RNA(1), is also
distributed in the ProbCons Debian package.
o pc-makegnufile(1), pc-compare(1), pc-project(1), which are distributed separately in the probcons-extra package.
REFERENCE
Please cite Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and Batzoglou, S. 2005. PROBCONS: Probabilistic Consistency-based Multiple Sequence
Alignment. Genome Research 15: 330-340.
AUTHORS
Chuong Do <chuongdo@cs.stanford.edu>
Wrote probcons in collaboration with Michael Brudno in the research group of Serafim Batzoglou, Department of Computer Science,
Stanford University.
Charles Plessy <charles-debian-nospam@plessy.org>
Wrote this manpage in DocBook XML for the Debian distribution.
COPYRIGHT
This program and its manpage are in the public domain.
probcons 1.12 2007-04-04 PROBCONS(1)