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Top Forums Shell Programming and Scripting Shell scripting problems - Commands not on local machine Post 302444878 by Sagan on Friday 13th of August 2010 05:02:57 AM
Old 08-13-2010
Lightbulb Shell scripting problems - Commands not on local machine

Hello all-

I have done a lot of searching tonight, but all leads seem to be dead ends. Forgive me if this has been covered, but I've searched the forum and the internet. I am having trouble building a shell script which uses SSH to login to our schools 1024 cluster grid. The issue that I am having is that I need the script to load MATLAB, using the basic functions:

$module load matlab

$matlab -nodisplay -nosplash -r simulations_sep_07

I can SSH into the remote machine just fine, and execute a script. However, I result in:


./Run_Simulation.sh: 8: module: not found
./Run_Simulation.sh: 10: matlab: not found


I have checked my path repeatedly, and know that I am in the working directory on the remote pc, the code appears to check the local pc for command validity.
I can run the script directly on the remote pc, and the script runs fine. Is there any way of getting this to work?

My files are all rsynced from my local machine, to the remote machine, and the command is set to SSH in and run a script to start the algorithm.

Any help would be great, it's about 4 AM, and this problem has beaten me for the day.

Thank you in advance, this forum has been very helpful as a learning tool.
 

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jrunscript(1)						      General Commands Manual						     jrunscript(1)

NAME
jrunscript - command line script shell SYNOPSIS
jrunscript [ options ] [ arguments... ] PARAMETERS
options Options, if used, should follow immediately after the command name. arguments Arguments, if used, should follow immediately after options or command name. DESCRIPTION
jrunscript is a command line script shell. jrunscript supports both an interactive (read-eval-print) mode and a batch (-f option) mode of script execution. This is a scripting language independent shell. By default, JavaScript is the language used, but the -l option can be used to specify a different language. Through Java to scripting language communication, jrunscript supports "exploratory programming" style. NOTE: This tool is experimental and may not be available in future versions of the JDK. OPTIONS
-classpath path Specify where to find the user's .class files that are accessed by the script. -cp path This is a synonym for -classpath path -Dname=value Set a Java system property. -Jflag Pass flag directly to the Java virtual machine on which jrunscript is run. -l language Use the specified scripting language. By default, JavaScript is used. Note that to use other scripting languages, you also need to spec- ify the corresponding script engine's jar file using -cp or -classpath option. -e script Evaluate the given script. This option can be used to run "one liner" scripts specified completely on the command line. -encoding encoding Specify the character encoding used while reading script files. -f script-file Evaluate the given script file (batch mode). -f - Read and evaluate a script from standard input (interactive mode). -help Output help message and exit. -? Output help message and exit. -q List all script engines available and exit. ARGUMENTS
If [arguments...] are present and if no -e or -f option is used, then the first argument is the script file and the rest of the arguments, if any, are passed as script arguments. If [arguments..] and -e or -f option are used, then all [arguments..] are passed as script argu- ments. If [arguments..], -e and -f are missing, interactive mode is used. Script arguments are available to a script in an engine variable named "arguments" of type String array. EXAMPLES
Executing inline scripts jrunscript -e "print('hello world')" jrunscript -e "cat('http://java.sun.com')" Use specified language and evaluate given script file jrunscript -l js -f test.js Interactive mode jrunscript js>print('hello world'); hello world js>34 + 55 89 js> thread(function() { print('hello world'); } hello world js> Run script file with script arguments jrunscript test.js arg1 arg2 arg3 test.js is script file to execute and arg1, arg2 and arg3 are passed to script as script arguments. Script can access these using "argu- ments" array. SEE ALSO
If JavaScript is used, then before evaluating any user defined script, jrunscript initializes certain built-in functions and objects. These JavaScript built-ins are documented in jsdocs. 06 Aug 2006 jrunscript(1)
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