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Full Discussion: Help with modifying files
Top Forums Shell Programming and Scripting Help with modifying files Post 302444293 by ad23 on Thursday 12th of August 2010 10:12:01 AM
Old 08-12-2010
Thanks for your reply.

But in Req 2, I need a condition to satisfy, so that pairs are in the following ouput:

Code:
>ABCD76568.x1 pair_info:898989
 AGTCGATCGTAGTCGTAGCTGT
 >ABCD76568.y1 pair_info:893489
 AGTCGATCGTAGTCGTAGCTGT
>ABCD76569.x1 pair_info:892189
 AGTCGATCGTAGTCGTAGCTGT
 >ABCD76569.y1 pair_info:2098308
 AGTCGATCGTAGTCGTAGCTGT
>ABCD76570.x1 pair_info:898989
 AGTCGATCGTAGTCGTAGCTGT
 >ABCD76570.y1 pairs_info:898989,87574
 AGTCGATCGTAGTCGTAGCTGT
>ABCD76572.x1 pairs_info:898989,34374
 AGTCGATCGTAGTCGTAGCTGT
>ABCD76572.y1 pair_info:898989
 AGTCGATCGTAGTCGTAGCTGT

Also I need to pull those sequences which have "pair(s)_info" field, but do not have a corresponding pair (x1 but no y1 and vice-versa), like the last sequence in my example:
Code:
>ABCD76573.y1 pair_info:113242
 AGTCGATCGTAGTCGTAGCTGT

will go in the first file.

Thanks!

---------- Post updated 08-12-10 at 09:12 AM ---------- Previous update was 08-11-10 at 11:34 AM ----------

Any more thoughts about this ?

Last edited by ad23; 08-11-2010 at 01:41 PM..
 

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set_color(1)							       fish							      set_color(1)

NAME
set_color - set_color - set the terminal color set_color - set the terminal color Synopsis set_color [-v --version] [-h --help] [-b --background COLOR] [COLOR] Description Change the foreground and/or background color of the terminal. COLOR is one of black, red, green, brown, yellow, blue, magenta, purple, cyan, white and normal. o -b, --background Set the background color o -c, --print-colors Prints a list of all valid color names o -h, --help Display help message and exit o -o, --bold Set bold or extra bright mode o -u, --underline Set underlined mode o -v, --version Display version and exit Calling set_color normal will set the terminal color to whatever is the default color of the terminal. Some terminals use the --bold escape sequence to switch to a brighter color set. On such terminals, set_color white will result in a grey font color, while set_color --bold white will result in a white font color. Not all terminal emulators support all these features. This is not a bug in set_color but a missing feature in the terminal emulator. set_color uses the terminfo database to look up how to change terminal colors on whatever terminal is in use. Some systems have old and incomplete terminfo databases, and may lack color information for terminals that support it. Download and install the latest version of ncurses and recompile fish against it in order to fix this issue. Version 1.23.1 Sun Jan 8 2012 set_color(1)
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