You can touch .filename (it's name same as file name in the file_list) when you find the date change ,so
if you find filename older than .filename ,so ,it has changed.
we can just think .filename is a timestamp file...
Hey all,
I have total new with shell scripting so I don't know if what I need to do even possible, here it is...for a duration of time (say...1 hour) I need to check for the existence of a particular file, if it exists then I will invoke a java program or I will continue to check until a)... (2 Replies)
I have a problem with file existence in shell. that is the code..
#!/bin/sh
if
then
echo "File Exist!!"
else
echo "Error"
fi
but it gives an error in 2nd line. Did i write example.txt wrong? Is there any (`) or (") missing? or something like that? (2 Replies)
Hi,
I am trying to check for the existence of a file using the 'test' and the file existence options.
When trying to check for a file with a space in between e.g 'Team List', it gives the following error.
learn1: line 3: test: `Team: binary operator expected
I am pasting my code below as... (7 Replies)
Hi
I want to check a particular file is available or not. But i know only the pattern of that file sat AB1234*.txt.I need the latest file name and it ll be used in the script. How can i do this using ls -ltr command.
Thanks,
LathishSundar V (2 Replies)
I have requirement where i need to search for files which start with SALESORDER and PURCHASEORDER. i need to process the files with SALESORDER first and then PURCHASEORDER. If SALESORDER files are not there i dont want to process PURCHASEORDER and i want to come out of script. I have written a code... (4 Replies)
Hi
I need to parse the file of same name which exist on different servers and calculate the count of string existed in both files.
Say a file abc.log exist on 2 servers.
I want to search for string "test" on both files and calculate the total count of search string's existence.
For... (6 Replies)
I need to check for the existence of a file *.log in a specific directory using a perl script.
Presently am not in that particular directory.
So i am using chdir ("/path/to/my/file)
And then i am using the -e in an if statement to check if it exists.
if (-e $File) {......}
$File contains the... (1 Reply)
Hi
I'm using the below command in shell script to check for file exists in the path
if
.....
fi
path and test are variables
path and the file exists but the commands inside if condition is executed (! operator used)
Is the above way of checking for file existence is correct?
... (4 Replies)
Hi,
I am looking for a shell script with the following.
1. It should check whether a particular file exists in a location
#!/bin/sh
if ;
then
echo "xxx.txt File Exists"
else
echo "File Not Found"
fi
2. If file exists, it should check for the modified date and run a command... (2 Replies)
Hope someone can help me on this
In a directory ,files are dynamically generated.I need a script to do the following
if files are not received for more than 2 hours or if the received file is empty
then do something
How can I put that in a script.Thank you
eg. in cd /dir_name the... (13 Replies)
Discussion started by: haadiya
13 Replies
LEARN ABOUT DEBIAN
bp_search2tribe
BP_SEARCH2TRIBE(1p) User Contributed Perl Documentation BP_SEARCH2TRIBE(1p)NAME
search2tribe - Turn SearchIO parseable reports(s) into TRIBE matrix
SYNOPSIS
Usage:
search2tribe [-o outputfile] [-f reportformat] [-w/--weight] file1 file2 ..
DESCRIPTION
This script is probably too slow for most people's uses. It is better to use something like scripts/searchio/fastam9_to_table, -m 9 output
from BLAST, or the blast2table from the BLAST O'Reilly book to get a tabular output from these programs and then feed the table into MCL
with the mcxdeblast script and the --m9 option.
This script will turn a protein Search report (BLASTP, FASTP, SSEARCH) into a Markov Matrix for TribeMCL clustering.
The options are:
-o filename - the output filename [default STDOUT]
-f format - search result format (blast, fasta)
(ssearch is fasta format). default is blast.
-w or --weight VALUE - Change the default weight for E(0.0) hits
to VALUE (default=200 (i.e. 1e-200) )
-h - this help menu
Additionally specify the filenames you want to process on the command-line. If no files are specified then STDIN input is assumed. You
specify this by doing: search2tribe < file1 file2 file3
AUTHOR
Jason Stajich, jason-at-bioperl-dot-org
perl v5.14.2 2012-03-02 BP_SEARCH2TRIBE(1p)