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Top Forums Shell Programming and Scripting To Create shell script files from a shell script Post 302440517 by forquare on Tuesday 27th of July 2010 11:44:00 AM
Old 07-27-2010
Here we go:
Code:
#!/usr/bin/sh

IFS="
"

fname=epdb_job

for x in `cat $fname`
do
    if [ ! -s $x.epdb.com ]
    then
        echo Creating file...
        cat > $x.epdb.com <<EOF
echo fname1=num_$x.txt
for y in \`cat \$fname1\`
do
    head -\$y t_\$x.mol2 | tail -n 200 | head -48 >>rlig_\$x.mol2
done
EOF
    fi
    echo "done $x"
done

The problem was that the back-ticks needed escaping as it was trying to run that cat command. I've also escaped the variable inside the back-ticks as otherwise it's not printed.

The IFS="
"
Bit makes sure that the for x in `cat $fname` skips spaces and only acts on new lines, if you use spaces to separate entries then take out the IFS bit.

HTH
Ben
 

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CAT(1)							      General Commands Manual							    CAT(1)

NAME
cat, read, nobs - catenate files SYNOPSIS
cat [ file ... ] read [ -m ] [ -n nline ] [ file ... ] nobs [ file ... ] DESCRIPTION
Cat reads each file in sequence and writes it on the standard output. Thus cat file prints a file and cat file1 file2 >file3 concatenates the first two files and places the result on the third. If no file is given, cat reads from the standard input. Output is buffered in blocks matching the input. Read copies to standard output exactly one line from the named file, default standard input. It is useful in interactive rc(1) scripts. The -m flag causes it to continue reading and writing multiple lines until end of file; -n causes it to read no more than nline lines. Read always executes a single write for each line of input, which can be helpful when preparing input to programs that expect line-at-a- time data. It never reads any more data from the input than it prints to the output. Nobs copies the named files to standard output except that it removes all backspace characters and the characters that precede them. It is useful to use as $PAGER with the Unix version of man(1) when run inside a win (see acme(1)) window. SOURCE
/src/cmd/cat.c /src/cmd/read.c /bin/nobs SEE ALSO
cp(1) DIAGNOSTICS
Read exits with status eof on end of file or, in the -n case, if it doesn't read nlines lines. BUGS
Beware of and which destroy input files before reading them. CAT(1)
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