hey guys
having some trouble figuring this out.
my program is supposed to take a name of a directory as a command line argument and change the filenames inside that directory to lowercase.
what i dont get is how you access that directory and go thru all the files and change the filenames... (1 Reply)
i have many files with extention filename.ASN_ERROR~ at a path. I want to move these files to another path and change extension to .ASN
There are more then 80,000 files so i cant use manual commands
muneebr (5 Replies)
I have an RHEL 5 server with 2 Broadcom on-board NICs and 2 quad-port Intel NICs. After I installed the OS, the Intel NICs became eth0-7, and the onboards are eth8 and eth9. I really need the onboard NICs to be eth0 and eth1 (I have plans to later remove the quad-ports and replace them with 10gE... (1 Reply)
Dear All,
I have some thousands of files in a folder and i need to change those file names without opening the file (no need to change anything in the file content, need to change the file name only). The filenames are as follows:
Myfile_name.1_parameter
Myfile_name.2_parameter... (6 Replies)
I have lot of files whose names are something like the following. I want to change the name of all the files from 'npt02' to 'n02'.
npt02-z30-sr65-rgdt0p50-dc0p01-16x12drw.tpf
npt02-z30-sr65-rgdt0p50-dc0p01-8x6drw.back
npt02-z30-sr65-rgdt0p50-dc0p01-8x6drw-bst-mis.xy... (5 Replies)
Hi guys,
I have lots of files that look like:
ABC.packed.dir
DEF.packed.dir
GHI.packed.dir
etc...
I would like them to have more of the usual naming convention
ABC
DEF
GHI
etc...
so I was thinking that I could: (2 Replies)
I have file names as shown and want to change the name to have only the first four numbers.
/home/chrisd/Desktop/nips/nips_2013/5212-learning-feature-selection-dependencies-in-multi-task-learning.pdf
/home/chrisd/Desktop/nips/nips_2013/5213-parametric-task-learning.pdf... (3 Replies)
I have a series of files as follows
file-1.pdf
file-2.pdf
file-3.pdf
file-4.pdf
file-5.pdf
file-6.pdf
file-7.pdf
I want to have the file names with odd numbers
starting from an initial number, for example 2000.
The result would be the following:
file-2001.pdf
file-2003.pdf... (9 Replies)
Bio::MolEvol::CodonModel(3pm) User Contributed Perl Documentation Bio::MolEvol::CodonModel(3pm)NAME
Bio::MolEvol::CodonModel - Codon Evolution Models
SYNOPSIS
use Bio::MolEvol::CodonModel;
my $codon_path = Bio::MolEvol::CodonModel->codon_path;
my ($ns, $syn) = $codon_path->{'AATAAC'};
print "AAT -> AAC: $ns ns mutations, $syn syn mutations
";
DESCRIPTION
This object is intended to group Codon Evolution Models. Currently it has one method codon_path that returns a hash reference representing
the number of mutations it takes to mutate from one codon to another. Some more description of how this is generated will follow later.
Additional codon evolution models and substitution matricies could be represented here as well. Some of this may not be optimally named so
this can change before the next stable release of the BioPerl code.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Jason Stajich
Email jason-at-bioperl-dot-org
This is based on work from Alisha Holloway at UC Davis and Corbin Jones at UNC-Chapel Hill.
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
codon_path
Title : codon_path
Usage : return a matrix of edit paths between codons
Example : my $codon_path = Bio::MolEvol::CodonModel->codon_path;
Returns : Hash reference
Args : none
perl v5.14.2 2012-03-02 Bio::MolEvol::CodonModel(3pm)