06-29-2010
Thanks for the reply. But the script has some problems. It does not discard the lines that are not common. The output needs to be intersection of the lines(i.e. common to both files) and also compare the value of the 3rd column to show the greatest value.
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi,
I have one situation. I have some 6-7 no. of files in one directory & I have to extract all the lines which exist in all these files. means I need to extract all common lines from all these files & put them in a separate file.
Please help. I know it could be done with the help of... (11 Replies)
Discussion started by: The Observer
11 Replies
2. Shell Programming and Scripting
Hi! I have a large set of pairs of text files (each pair in their own subdirectory) and each pair shares head/tail (a couple of first and last lines) but differs in the middle part. I need to delete the heads/tails and keep only the middle portions in which they differ. The lengths of heads/tails... (1 Reply)
Discussion started by: dobryden
1 Replies
3. Shell Programming and Scripting
Hello guys,
I need a script to get the common lines from two files with a criteria that if the first two columns match then I keep the maximum value of the 5th column.(tab separated columns) . 3rd and 4th columns corresponds to the row which has highest value for the 5th column.
Sample... (2 Replies)
Discussion started by: jaysean
2 Replies
4. Shell Programming and Scripting
FileA
chr1 31237964 NP_001018494.1 PUM1 M340L
chr1 31237964 NP_055491.1 PUM1 M340L
chr1 33251518 NP_037543.1 AK2 H191D
chr1 33251518 NP_001616.1 AK2 H191D
chr1 57027345 NP_001004303.2 C1orf168 P270S
FileB
chr1 ... (9 Replies)
Discussion started by: genehunter
9 Replies
5. Shell Programming and Scripting
Hello everyone
A few years Ago the user radoulov posted a fancy solution for a problem, which was about finding common lines (gene variation names) between multiple samples (files). The code was:
awk 'END {
for (R in rec) {
n = split(rec, t, "/")
if (n > 1)
dup = dup ?... (5 Replies)
Discussion started by: bibb
5 Replies
6. UNIX for Dummies Questions & Answers
Thanks everyone. I got that problem solved.
I require one more help here. (Yes, UNIX definitely seems to be fun and useful, and I WILL eventually learn it for myself. But I am now on a different project and don't really have time to go through all the basics. So, I will really appreciate some... (6 Replies)
Discussion started by: latsyrc
6 Replies
7. Shell Programming and Scripting
Dear All,
I have 2 files. If field 1, 2, 4 and 5 matches in both file1 and file2, I want to print the whole line of file1 and file2 one after another in my output file.
File1:
sc2/80 20 . A T 86 F=5;U=4
sc2/60 55 . G T ... (1 Reply)
Discussion started by: NamS
1 Replies
8. Shell Programming and Scripting
Hi! I would like to comm -12 with one file and with all of the files in another folder that has a 100 files or more (that file is not in that folder) to find common text lines. I would like to have each case that they have common lines to be written to a different output file and the names of the... (6 Replies)
Discussion started by: Eve
6 Replies
9. Shell Programming and Scripting
Could it be possible to find common lines between all of the files in one folder? Just like comm -12 . So all of the files two at a time. I would like all of the outcomes to be written to a different files, and the file names could be simply numbers - 1 , 2 , 3 etc. All of the file names contain... (19 Replies)
Discussion started by: Eve
19 Replies
10. UNIX for Beginners Questions & Answers
Hi,
A beginner one.
my input.tab (tab-separated):
h1 h2 h3 h4 h5
item1 grpA 2 3 customer1
item2 grpB 4 6 customer1
item3 grpA 5 9 customer1
item4 grpA 0 0 customer2
item5 grpA 9 1 customer2
objective:
output a file for each customer ($5) with the item number ($1) only if $2 matches... (2 Replies)
Discussion started by: beca123456
2 Replies