06-23-2010
Fantastic!!!!
It works like a charm!
Thanks once again!
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1. Shell Programming and Scripting
My input:
File_1:
2000_t
g1110.b1
abb.1
2001_t
g1111.b1
abb.2
abb.2
g1112.b1
abb.3
2002_t
.
.
File_2:
2000_t Ali england 135
abb.1 Zoe british 150
2001_t Ali england 305
g1111.b1 Lucy russia 126 (6 Replies)
Discussion started by: patrick87
6 Replies
2. Shell Programming and Scripting
Input
#GEO-1-type-1-fwd-Initial 890 1519
OPKHIJEFVTEFVHIJEFVOPKHIJTOPKEFVHIJTEFVOPKOPKHIJHIJHIJTTOPKHIJHIJEFVEFVOPKHIJOPKHIJOPKEFVEFVOPKHIJHIJEFVHIJHIJEFVTHIJOPKOPKTEFVEFVEFVOPKHIJOPKOPKHIJTTEFVEFVTEFV
#GEO-1-type-2-fwd-Terminal 1572 2030... (7 Replies)
Discussion started by: patrick87
7 Replies
3. Shell Programming and Scripting
My file looks like this:
But I would like to 'trim' all sequences to the same lenght 32 characters, keeping intact all the identifier (>GHXCZCC01AJ8CJ)
Would it be possible to use awk to perform this task? (2 Replies)
Discussion started by: Xterra
2 Replies
4. Shell Programming and Scripting
My file looks like this
But I need to remove the entry with the identifier >Reference1 along with the entire sequence. Thus, I will end up having the following file
Thanks in advance! (2 Replies)
Discussion started by: Xterra
2 Replies
5. Shell Programming and Scripting
My file looks something like this
Wnat I need is to look for the Reference sequence (">Reference1") and based on the length of that sequence trim all the entries in that file. So, the rersulting file will contain all sequences with the same length, like this
Thus, all sequences will keep... (5 Replies)
Discussion started by: Xterra
5 Replies
6. Shell Programming and Scripting
Hi Unix gurus,
I am trying to remove the filenames based on MMDDYYYY in the physical name as such so that the directory always has the recent 3 files based on MMDDYYYY. "HHMM" is just dummy in this case. You wont have two files with different HHMM on the same day.
For example in a... (4 Replies)
Discussion started by: shankar1dada
4 Replies
7. Shell Programming and Scripting
Input file
data20714 7327 7366 detail
data20714 7327 7366 main
data250821 56532 57634 detail
data250821 57527 57634 main
data250821 57359 57474 main
data250821 57212 57301 main
data250821 57140 57159 detail
data250821 56834 57082 main
data250821 56708 56779 main ... (3 Replies)
Discussion started by: perl_beginner
3 Replies
8. UNIX for Dummies Questions & Answers
Hi,
I have a string say "whateverCluster".
I need everthing apart from the string "Cluster"
Input:
whateverCluster
Desired output:
whatever (5 Replies)
Discussion started by: mohtashims
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9. Shell Programming and Scripting
Hi,
I have a file with more than 28000 records and it looks like below..
>mm10_refflat_ABCD range=chr1:1234567-2345678
tgtgcacactacacatgactagtacatgactagac....so on
>mm10_refflat_BCD range=chr1:3234567-4545678...
tgtgcacactacacatgactagtatgtgcacactacacatgactagta
.
.
.
.
.
so on
... (2 Replies)
Discussion started by: Diya123
2 Replies
10. Shell Programming and Scripting
Hi all,
I have been trying to delete duplicates based on a certain pattern but failed to make it works. There are more than 1 pattern which are duplicated but i just want to remove 1 pattern only and remain the rest. I cannot use awk '!x++' inputfile.txt or sed '/pattern/d' or use uniq and sort... (7 Replies)
Discussion started by: redse171
7 Replies
LEARN ABOUT LINUX
npm-run-script
NPM-RUN-SCRIPT(1) NPM-RUN-SCRIPT(1)
NAME
npm-run-script - Run arbitrary package scripts
SYNOPSIS
npm run-script <command> [--silent] [-- <args>...]
alias: npm run
DESCRIPTION
This runs an arbitrary command from a package's "scripts" object. If no "command" is provided, it will list the available scripts.
run[-script] is used by the test, start, restart, and stop commands, but can be called directly, as well. When the scripts in the package
are printed out, they're separated into lifecycle (test, start, restart) and directly-run scripts.
As of ` https://blog.npmjs.org/post/98131109725/npm-2-0-0, you can use custom arguments when executing scripts. The special option -- is
used by getopt https://goo.gl/KxMmtG to delimit the end of the options. npm will pass all the arguments after the -- directly to your
script:
npm run test -- --grep="pattern"
The arguments will only be passed to the script specified after npm run and not to any pre or post script.
The env script is a special built-in command that can be used to list environment variables that will be available to the script at run-
time. If an "env" command is defined in your package, it will take precedence over the built-in.
In addition to the shell's pre-existing PATH, npm run adds node_modules/.bin to the PATH provided to scripts. Any binaries provided by
locally-installed dependencies can be used without the node_modules/.bin prefix. For example, if there is a devDependency on tap in your
package, you should write:
"scripts": {"test": "tap test/*.js"}
instead of
"scripts": {"test": "node_modules/.bin/tap test/*.js"}
to run your tests.
The actual shell your script is run within is platform dependent. By default, on Unix-like systems it is the /bin/sh command, on Windows it
is the cmd.exe. The actual shell referred to by /bin/sh also depends on the system. As of `
https://github.com/npm/npm/releases/tag/v5.1.0 you can customize the shell with the script-shell configuration.
Scripts are run from the root of the module, regardless of what your current working directory is when you call npm run. If you want your
script to use different behavior based on what subdirectory you're in, you can use the INIT_CWD environment variable, which holds the full
path you were in when you ran npm run.
npm run sets the NODE environment variable to the node executable with which npm is executed. Also, if the --scripts-prepend-node-path is
passed, the directory within which node resides is added to the PATH. If --scripts-prepend-node-path=auto is passed (which has been the
default in npm v3), this is only performed when that node executable is not found in the PATH.
If you try to run a script without having a node_modules directory and it fails, you will be given a warning to run npm install, just in
case you've forgotten.
You can use the --silent flag to prevent showing npm ERR! output on error.
You can use the --if-present flag to avoid exiting with a non-zero exit code when the script is undefined. This lets you run potentially
undefined scripts without breaking the execution chain.
SEE ALSO
o npm help 7 scripts
o npm help test
o npm help start
o npm help restart
o npm help stop
o npm help 7 config
January 2019 NPM-RUN-SCRIPT(1)