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Shell Programming and Scripting
Trimming sequences based on specific pattern
Post 302432065 by Xterra on Wednesday 23rd of June 2010 06:49:38 PM
06-23-2010
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10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
My input:
File_1:
2000_t
g1110.b1
abb.1
2001_t
g1111.b1
abb.2
abb.2
g1112.b1
abb.3
2002_t
.
.
File_2:
2000_t Ali england 135
abb.1 Zoe british 150
2001_t Ali england 305
g1111.b1 Lucy russia 126 (6 Replies)
Discussion started by: patrick87
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2. Shell Programming and Scripting
Input
#GEO-1-type-1-fwd-Initial 890 1519
OPKHIJEFVTEFVHIJEFVOPKHIJTOPKEFVHIJTEFVOPKOPKHIJHIJHIJTTOPKHIJHIJEFVEFVOPKHIJOPKHIJOPKEFVEFVOPKHIJHIJEFVHIJHIJEFVTHIJOPKOPKTEFVEFVEFVOPKHIJOPKOPKHIJTTEFVEFVTEFV
#GEO-1-type-2-fwd-Terminal 1572 2030... (7 Replies)
Discussion started by: patrick87
7 Replies
3. Shell Programming and Scripting
My file looks like this:
But I would like to 'trim' all sequences to the same lenght 32 characters, keeping intact all the identifier (>GHXCZCC01AJ8CJ)
Would it be possible to use awk to perform this task? (2 Replies)
Discussion started by: Xterra
2 Replies
4. Shell Programming and Scripting
My file looks like this
But I need to remove the entry with the identifier >Reference1 along with the entire sequence. Thus, I will end up having the following file
Thanks in advance! (2 Replies)
Discussion started by: Xterra
2 Replies
5. Shell Programming and Scripting
My file looks something like this
Wnat I need is to look for the Reference sequence (">Reference1") and based on the length of that sequence trim all the entries in that file. So, the rersulting file will contain all sequences with the same length, like this
Thus, all sequences will keep... (5 Replies)
Discussion started by: Xterra
5 Replies
6. Shell Programming and Scripting
Hi Unix gurus,
I am trying to remove the filenames based on MMDDYYYY in the physical name as such so that the directory always has the recent 3 files based on MMDDYYYY. "HHMM" is just dummy in this case. You wont have two files with different HHMM on the same day.
For example in a... (4 Replies)
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4 Replies
7. Shell Programming and Scripting
Input file
data20714 7327 7366 detail
data20714 7327 7366 main
data250821 56532 57634 detail
data250821 57527 57634 main
data250821 57359 57474 main
data250821 57212 57301 main
data250821 57140 57159 detail
data250821 56834 57082 main
data250821 56708 56779 main ... (3 Replies)
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Hi,
I have a string say "whateverCluster".
I need everthing apart from the string "Cluster"
Input:
whateverCluster
Desired output:
whatever (5 Replies)
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9. Shell Programming and Scripting
Hi,
I have a file with more than 28000 records and it looks like below..
>mm10_refflat_ABCD range=chr1:1234567-2345678
tgtgcacactacacatgactagtacatgactagac....so on
>mm10_refflat_BCD range=chr1:3234567-4545678...
tgtgcacactacacatgactagtatgtgcacactacacatgactagta
.
.
.
.
.
so on
... (2 Replies)
Discussion started by: Diya123
2 Replies
10. Shell Programming and Scripting
Hi all,
I have been trying to delete duplicates based on a certain pattern but failed to make it works. There are more than 1 pattern which are duplicated but i just want to remove 1 pattern only and remain the rest. I cannot use awk '!x++' inputfile.txt or sed '/pattern/d' or use uniq and sort... (7 Replies)
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7 Replies
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Perlbal::Manual - Guide and reference manual for Perlbal VERSION Perlbal 1.78. DESCRIPTION This is the comprehensive guide and reference manual for Perlbal. Perlbal::Manual::Configuration How to configure Perlbal: pools, services, syntax and more. Perlbal::Manual::Contributing How to contribute to Perlbal. Perlbal::Manual::Credits Author and contributor credits for Perlbal. Perlbal::Manual::Debugging How Perlbal's Debugging system works. Perlbal::Manual::FailOver How Perlbal's Fail Over mechanism works. Perlbal::Manual::HighPriority Perlbal's high/low priority queueing system and how to use it. Perlbal::Manual::Hooks Existing hooks and how they work. Perlbal::Manual::Install Installation procedures for Perlbal. Perlbal::Manual::Internals Perlbal's architecture at a glance. Useful for developers. Perlbal::Manual::LoadBalancer Setting up a Perlbal Load Balancing service. Perlbal::Manual::Logging How Perlbal's Logging system works. Perlbal::Manual::Management Setting up a "management" service, connecting to that service and managing Perlbal on-the-fly. Perlbal::Manual::Plugins Known plugins and how to create new ones. Perlbal::Manual::ReverseProxy Setting up a Perlbal "reverse_proxy" service. Perlbal::Manual::Roles Brief description of existing roles. Perlbal::Manual::Selector Setting up a Perlbal "selector" service. Perlbal::Manual::WebServer Setting up a Perlbal "web_server" service. AUTHORS
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