06-17-2010
Frequency of each character
My bad, l guess I did not express myself correctly. From my previous example:
Quote:
> Seq1 Freq 1
ATC
> Seq2 Freq 33
ACG
> Seq3 Freq 33
TTG
> Seq4 Freq 33
TCC
The first character in the first sequence is A, and the frequency of that sequence is 1%. However, A is also present in the same position (1) in sequence #2 and the frequency of that second sequence is 33%. Therefore, the 'global' frequency of A in the data set in position 1 is = 34%, hence it should be kept. When you do the same for the second and thrid position you can see that the global frequency for T (second character) and C (third character) from Sequence 1, are =34%, and therfore that should be enought to keep the entire sequence.
I hope I have better explain what I would like to accomplish.
Thanks one more time!
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LEARN ABOUT DEBIAN
config::mvp::sequence
Config::MVP::Sequence(3pm) User Contributed Perl Documentation Config::MVP::Sequence(3pm)
NAME
Config::MVP::Sequence - an ordered set of named configuration sections
VERSION
version 2.200002
DESCRIPTION
A Config::MVP::Sequence is an ordered set of configuration sections, each of which has a name unique within the sequence.
For the most part, you can just consult Config::MVP to understand what this class is and how it's used.
ATTRIBUTES
is_finalized
This attribute is true if the sequence has been marked finalized, which will prevent any changes (via methods like "add_section" or
"delete_section"). It can be set with the "finalize" method.
METHODS
add_section
$sequence->add_section($section);
This method adds the given section to the end of the sequence. If the sequence already contains a section with the same name as the new
section, an exception will be raised.
delete_section
my $deleted_section = $sequence->delete_section( $name );
This method removes a section from the sequence and returns the removed section. If no section existed, the method returns false.
section_named
my $section = $sequence->section_named( $name );
This method returns the section with the given name, if one exists in the sequence. If no such section exists, the method returns false.
section_names
my @names = $sequence->section_names;
This method returns a list of the names of the sections, in order.
sections
my @sections = $sequence->sections;
This method returns the section objects, in order.
AUTHOR
Ricardo Signes <rjbs@cpan.org>
COPYRIGHT AND LICENSE
This software is copyright (c) 2012 by Ricardo Signes.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.
perl v5.14.2 2012-03-16 Config::MVP::Sequence(3pm)