Hello;
I have a directory that is collecting log and act files. I need to write a script that will remove these files once they are 30 days old. I have read through a number of threads on this site that have given me a great deal of information. However I have what seems to be a unique... (7 Replies)
I need help to create batch file .
I want to run some programs in sequence in batch mode . I have one file which contains the name of program and command
The test.bat file contain this data
stsrun -v devel area1.exp
stsrun -v devel prime1.exp
stsrun -v devel treat.exp
Please help... (1 Reply)
Hi,
I want to make changes to inittab file and reread it using "telinit q" to make changes effective immediately. Is it safe to do that while important apps are running ?
thanks
Vilius (1 Reply)
Figured out the first half but am still having a little trouble shooting problem with the Initialization Files. I am working in bash on a remote server.
When I log on I am seeing the correct prompt but right before that I am also seeing this
the id -u integer expression expected is what... (2 Replies)
hi all,
this is my first post here...i hope that this is the correct section to write my question.
I have a distro linux without gui, only text mode.
So, it's possible run automatically a command or a program as "top" or "ping" and get the result on the main shell , after the boot and after... (6 Replies)
Hi,
I want to execute .rdf file which uses oracle report in crontab ..Can you please help me out how to schedule it crontab.as it is a rdf file
Please give any suggestions regarding the above issue. (0 Replies)
1. The problem statement, all variables and given/known data:
Get each of these programs to run. Prove that you've done this(use script). Give a description of each program along with sample executions.
These are the exact programs we were given.
2. Relevant commands, code, scripts,... (11 Replies)
Discussion started by: FaTaL
11 Replies
LEARN ABOUT DEBIAN
bio::search::hit::hmmer3hit
Bio::Search::Hit::hmmer3Hit(3pm) User Contributed Perl Documentation Bio::Search::Hit::hmmer3Hit(3pm)NAME
Bio::Search::Hit::hmmer3Hit - DESCRIPTION of Object
SYNOPSIS
Give standard usage here
DESCRIPTION
Describe the object here
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Thomas Sharpton
Email thomas.sharpton@gmail.com
Describe contact details here
CONTRIBUTORS
Additional contributors names and emails here
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::Search::Hit::HMMERHit->new();
Function: Builds a new Bio::Search::Hit::HMMERHit object
Returns : Bio::Search::Hit::HMMERHit
Args :
Plus the Bio::Search::Hit::GenericHit inherited params
-name => Name of Hit (required)
-description => Description (optional)
-accession => Accession number (optional)
-length => Length of the Hit (optional)
-score => Raw Score for the Hit (optional)
-significance => Significance value for the Hit (optional)
-algorithm => Algorithm used (BLASTP, FASTX, etc...)
-hsps => Array ref of HSPs for this Hit.
next_domain
Title : next_domain
Usage : my $domain = $hit->next_domain();
Function: An alias for L<next_hsp()>, this will return the next HSP
Returns : L<Bio::Search::HSP::HSPI> object
Args : none
domains
Title : domains
Usage : my @domains = $hit->domains();
Function: An alias for L<hsps()>, this will return the full list of hsps
Returns : array of L<Bio::Search::HSP::HSPI> objects
Args : none
bits
Usage : $hit_object->bits();
Purpose : Gets the bit score of the best HSP for the current hit.
Example : $bits = $hit_object->bits();
Returns : Integer or undef if bit score is not set
Argument : n/a
See Also : score()
iteration
Title : iteration
Usage : $obj->iteration($newval)
Function: PSI-BLAST iteration
Returns : value of iteration
Args : newvalue (optional)
perl v5.14.2 2012-03-02 Bio::Search::Hit::hmmer3Hit(3pm)