Problem with executing a shell script through the cron Post: 302427267

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1. HP-UX

executing shell script from the cron

This isn't the usual problem that a shell script runs from the command line and not the cron. It's a little different. Among other things, the shell scrip executes my .profile to set a bunch of variables. It then does an env to ensure that it ran OK. There are echos in the shell script and...

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Problem with scheduling a shell script on cygwin using cron

Hi, Before I start, I would like to inform that, I went through all FAQs and other threads before posting here. I 'm trying to schedule a shell script on cygwin using cron. No matter what I do I don't seem to get the cron job executing my bash script. My script is temp.sh echo `date` >...

3. AIX

Having problem with executing shell script to get the pid details!

Hello Everyone, I am new to shell scripting and also i am very new to AIX machine I have a question. I have shell script which contains the follwing "ps -e |grep $1 echo $2" i run this schell script by doing this ./startSehllscript 3444 passed with two parameters . Accroiding my...

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Problem with executing command inside a cron job

Hi All, I have scheduled a script in cron which writes output to the below file. ....>> /data/Target/wrapper_invoke_ds_job_`date '+%Y%m%d'`.ksh_out 2>&1 But the date command is not getting resolved in the format specified. It just resolves to the following. wrapper_invoke_MQ_ds_job_Tue...

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Problem Executing Firmware Command using Shell Script

Guys, I have a script that should change one of the configuration Parameter in a http accelerator, this config change which will halt http traffic into device. So I have designed a script which should do these changes. But after executing this script, found that one of the input variable is not...

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Executing a script from CRON behaves differently than terminal

Hi have a script which transferers from Microsoft server to Linux box. The scripts(ksh) is on Linux box. If I run script from terminal, it transfers files to directory. Where as If I run script from CRON. It does not. Here is the log of both: Terminal execution log:...

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Cron shell script not executing diskutil command

I'm trying to learn how to use cron for repetative tasks. I have an external disk that needs to be unmounted and remounted every hour due to some problems that a backup utility (specifically, TimeMachine) is having repeatedly accessing the device. I've created a shell script that will find the...

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Script not executing using cron

Hi, I created a script which connects to database and update a table. This script is running fine when i run it manually but when i am trying to execute it scheduling in crontab.script is executing but Data is not getting updated. below is my script sqlplus test/##### >> test_feed.log <<!...

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Expect script not executing via cron

Hello All, I'm having an issue getting an expect script to run as a cron job. The script executes fin if I run it from the command line but I get nothing when trying to run it as a cron job. I've researched other forums and threads and there have been references to the environment, or lack...

10. AIX

Script is not executing as expected when I schedule it in cron

Hi, I have a shell script which fetches the MRP status and the LAG status. When I execute it manually like, sh <script_name>, it fetches the output as expected, but when I schedule through crontab, it's not working as expected. Any help would be really appreciated. Here is the code...

LEARN ABOUT DEBIAN

fastq_quality_trimmer

FASTQ_QUALITY_TRIMMER(1)					   User Commands					  FASTQ_QUALITY_TRIMMER(1)

NAME

       fastq_quality_trimmer - Filters sequences based on quality

DESCRIPTION

       usage:  fastq_quality_trimmer  [-h]  [-v]  [-t  N]  [-l	N] [-z] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.13.1 by A. Gordon (gor-
       don@cshl.edu)

       [-h]   = This helpful help screen.

       [-t N] = Quality threshold - nucleotides with lower

	      quality will be trimmed (from the end of the sequence).

       [-l N] = Minimum length - sequences shorter than this (after trimming)

	      will be discarded. Default = 0 = no minimum length.

       [-z]   = Compress output with GZIP.

       [-i INFILE]
	      = FASTQ input file. default is STDIN.

	      [-o OUTFILE] = FASTQ output file. default is STDOUT.  [-v]	 = Verbose - report number of sequences.

       If [-o] is specified,
	      report will be printed to STDOUT.

	      If [-o] is not specified (and output goes to STDOUT), report will be printed to STDERR.

SEE ALSO

       The quality of this automatically generated manpage might be insufficient.  It is suggested to visit

	      http://hannonlab.cshl.edu/fastx_toolkit/commandline.html

       to get a better layout as well as an overview about connected FASTX tools.

fastq_quality_trimmer 0.0.13.1					    April 2012						  FASTQ_QUALITY_TRIMMER(1)

10 More Discussions You Might Find Interesting

1. HP-UX

executing shell script from the cron

Discussion started by: abNORMal

2. UNIX for Dummies Questions & Answers

Problem with scheduling a shell script on cygwin using cron

Discussion started by: shash

3. AIX

Having problem with executing shell script to get the pid details!

Discussion started by: swati

4. UNIX for Dummies Questions & Answers

Problem with executing command inside a cron job

Discussion started by: pkm_oec