Sponsored Content
Full Discussion: Beginner Questions.
Homework and Emergencies Homework & Coursework Questions Beginner Questions. Post 302426756 by vlay2 on Wednesday 2nd of June 2010 09:30:46 PM
Old 06-02-2010
Beginner Questions.

This is the Test_Data.snp file: MEGAUPLOAD - The leading online storage and file delivery service

1. The problem statement, all variables and given/known data:
Problem Set:

Before you get started working with these challenges, be aware that the first challenge is reformatting the test data file so that you get rid of the ‘header' and get all of the columns
delimited for working with in unix. (I'll give you another clue in addition to getting rid of the header, learn ‘grep', ‘cat', ‘cut', ‘awk', ‘sed' )

write a script to change the extension of your file : Test_Data.snp to Test_Data.txt
print all lines that have an ‘A' base call either in the reference (column 2) or query (column 3) strain
print only column titled ‘LEN R' to a new file called Reference_length.txt
sort the file by column 4 ( titled [P2])
print only the lines that have a basecall in columns 2 and 3 (under [SUB] headings) and sort by [LEN R] , output to new file called snp_report.txt


2. Relevant commands, code, scripts, algorithms:

I'm not sure what this means?

3. The attempts at a solution (include all code and scripts):

The only thing I know how to do is actually show the data set in the terminal window


4. Complete Name of School (University), City (State), Country, Name of Professor, and Course Number (Link to Course):

This is part of a learning scholarship over the summer. I am working with Dr. Mia Champion of TGEN North in Flagstaff. She recommended that I come here for help.


Thanks for any help you can provide. I literally just started learning this a day ago, so please bear with me.
 

9 More Discussions You Might Find Interesting

1. Programming

Beginner C

Anyone know where I can get started in C++ programming in unix? Any good free tutorials or websites to start at? I am okay in unix scripting but have never done c programming of any sort... What are the main advantages of using C++ ? (2 Replies)
Discussion started by: frustrated1
2 Replies

2. UNIX for Dummies Questions & Answers

Beginner Questions

Hi everyone. I guess I am the new guy, and also new to Unix. I purchased a box of computer supplies at an auction, and found an unopened box of Compaq Smartstart. So here is what I have... Smartstart 2.5, Netware, Windows NT, OS2 & Lan Server, SCO Open Server release, SCO Unixware 2, Oracle 7 for... (3 Replies)
Discussion started by: Darin
3 Replies

3. UNIX for Dummies Questions & Answers

Absolute Beginner Questions

... before you role your eyes, I picked up my first Unix book 3 days ago! As such, I have a few quick questions that I'm sure are super easy for everyone out there but me! Forgive me if the terminology I use is wrong ... I'm accessing a remote Unix server, I can make my way around directories... (2 Replies)
Discussion started by: joey_tomatoes
2 Replies

4. Linux

Beginner questions about versions and installing

1. I have never used or dealt with unix, linux, or any variation thereof, and want to. My biggest problem is that all the versions I've looked at want you to install from a CD or DVD, but I'm wanting to put it onto an Asus eeepc, which has no such drive. How would I go about installing on it? ... (4 Replies)
Discussion started by: lemming
4 Replies

5. UNIX for Dummies Questions & Answers

Beginner - What Should I Do First?

Hi people.... I have just started to learn unix.I want to know which version of Unix to install plus how to install it.I need to practise and make myself aware of how unix works.My thread is from an educational point of view.Also please feel free to give your suggestions as I am... (3 Replies)
Discussion started by: amit.kanade1983
3 Replies

6. Homework & Coursework Questions

Print questions from a questions folder in a sequential order

1.) I am to write scripts that will be phasetest folder in the home directory. 2.) The folder should have a set-up,phase and display files I have written a small script which i used to check for the existing users and their password. What I need help with: I have a set of questions in a... (19 Replies)
Discussion started by: moraks007
19 Replies

7. AIX

Beginner's questions about AIX (6.1)

Hello, For some time I have intellistation 9111-285 and I installed AIX 6.1 on it. As a complete beginner I have 2 questions in general about AIX and two specific: 1. is the SMS (system management services) part of AIX? As I noticed when I had Yellowdog Linux installed they weren't available?... (2 Replies)
Discussion started by: kenashkov
2 Replies

8. Shell Programming and Scripting

beginner scripting questions User variables

If there's anywhere to look this up, it would be just as helpful. I googled and really couldn't find anything relative to this. ok... General Variables 1) When creating a script I made a file "prog1.sh" does it matter if the end is .sh or is this what has to be done like prog.bash or... (4 Replies)
Discussion started by: austing5
4 Replies

9. Shell Programming and Scripting

[Beginner's questions] Filename Validation & Parsing

Hi !! I'm rather new both to the UNIX and scripting worlds, and I'm learning the ropes of scripting. Having said this, please excuse me if you notice certain basic errors. I'm working on a script that implements .jar and .war files for a WAS environment and I need to perform certain... (4 Replies)
Discussion started by: levaldez
4 Replies
qmail-queue(8)						      System Manager's Manual						    qmail-queue(8)

NAME
qmail-queue - queue a mail message for delivery SYNOPSIS
qmail-queue DESCRIPTION
qmail-queue reads a mail message from descriptor 0. It then reads envelope information from descriptor 1. It places the message into the outgoing queue for future delivery by qmail-send. The envelope information is an envelope sender address followed by a list of envelope recipient addresses. The sender address is preceded by the letter F and terminated by a 0 byte. Each recipient address is preceded by the letter T and terminated by a 0 byte. The list of recipient addresses is terminated by an extra 0 byte. If qmail-queue sees end-of-file before the extra 0 byte, it aborts without placing the message into the queue. Every envelope recipient address should contain a username, an @ sign, and a fully qualified domain name. qmail-queue always adds a Received line to the top of the message. Other than this, qmail-queue does not inspect the message and does not enforce any restrictions on its contents. However, the recipients probably expect to see a proper header, as described in qmail-header(5). Programs included with qmail which invoke qmail-queue will invoke the contents of $QMAILQUEUE instead, if that environment variable is set. FILESYSTEM RESTRICTIONS
qmail-queue imposes two constraints on the queue structure: each mess subdirectory must be in the same filesystem as the pid directory; and each todo subdirectory must be in the same filesystem as the intd directory. EXIT CODES
qmail-queue does not print diagnostics. It exits 0 if it has successfully queued the message. It exits between 1 and 99 if it has failed to queue the message. All qmail-queue error codes between 11 and 40 indicate permanent errors: 11 Address too long. 31 Mail server permanently refuses to send the message to any recipients. (Not used by qmail-queue, but can be used by programs offering the same interface.) All other qmail-queue error codes indicate temporary errors: 51 Out of memory. 52 Timeout. 53 Write error; e.g., disk full. 54 Unable to read the message or envelope. 55 Unable to read a configuration file. (Not used by qmail-queue.) 56 Problem making a network connection from this host. (Not used by qmail-queue.) 61 Problem with the qmail home directory. 62 Problem with the queue directory. 63 Problem with queue/pid. 64 Problem with queue/mess. 65 Problem with queue/intd. 66 Problem with queue/todo. 71 Mail server temporarily refuses to send the message to any recipients. (Not used by qmail-queue.) 72 Connection to mail server timed out. (Not used by qmail-queue.) 73 Connection to mail server rejected. (Not used by qmail-queue.) 74 Connection to mail server succeeded, but communication failed. (Not used by qmail-queue.) 81 Internal bug; e.g., segmentation fault. 91 Envelope format error. SEE ALSO
addresses(5), envelopes(5), qmail-header(5), qmail-inject(8), qmail-qmqpc(8), qmail-send(8), qmail-smtpd(8) qmail-queue(8)
All times are GMT -4. The time now is 12:46 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy