Do somebody have idea How to sort standard input without first line which in my case it's header
Example:
Cnt|VT |STAT|Date |Time |From |Alert Message |Instance |
125| | | 260308 |160026 |ZAMUAT2|ifpollq... (8 Replies)
Hello,
I have a header which I have to add to a sorted file, however if I use
cat header sortedfile > newfile, the operation takes 2 minutes as the sorted file is over 400mb.
I have noticed that when I sort the 400mb unsorted file, this only takes 14 seconds to create the output.
As... (2 Replies)
Hi,
I'm ssh'ing into a server using ruby and sending a one-liner to retrieve the output of the 'ps aux' command. So far, this is what I have:
ps aux | sort -r -n -k3 | sed -e '1s/^/this is first\n/' | head -n10
With this I can insert a line at position 1, but I would rather extract the... (3 Replies)
Hi,
I have a file with a header line, followed by some contents. How can I sort the file according to header lines?
eg.
/* abcd_005*/
a
bc
/* abcd_001*/
d
e
/* abcd_002*/
x
y
desired output:
/*abcd_001*/ (0 Replies)
I am having report file with header and footer . The details in between header and footer are separated by a pipe charater. I want to sort the file by considering multiple columns in between header and footer.
pls help (4 Replies)
How to sort a tab delimited file first on col1 and then on col2. Also I need to keep the header intact.
file.txt
val1 val2 val3 val4
a b c d
m n o p
e f g h
i j k l
... (3 Replies)
I have several las files with a header and each file start Version and text and before the data starts end up with ~Ascii, then the numbers starts:
-------------------------------------------------------------------------
Code:
~Version
.....text....
~Ascii
2 abc 230 1 name
1 abc ... (1 Reply)
I have several las files with a header and each file start Version and text and before the data starts end up with ~Ascii, then the numbers starts:
-------------------------------------------------------------------------
~Version
.....text....
~Ascii
2 abc 230 1 name
1 abc 400 1... (17 Replies)
Hi,
I am using SUN SOLARIS (SunOS sun4v sparc SUNW, T5240).
I have a huge data file with header and trailer. This file gets used into an ETL process. ETL skips the header record (which is the first record of the file) and loads the rest of the record. The file can be delimited (comma,... (5 Replies)
Hi ,
My UNIX system is SUN Solaris.
I am trying to do a simple thing as described below.
I have a PIPE delimited file that has header and trailer. So the file is something like below:
Test1.txt looks like something below:
field_data1|field_data2|and some more data --Header
... (5 Replies)
Discussion started by: Saanvi1
5 Replies
LEARN ABOUT DEBIAN
bio::variation::snp
Bio::Variation::SNP(3pm) User Contributed Perl Documentation Bio::Variation::SNP(3pm)NAME
Bio::Variation::SNP - submitted SNP
SYNOPSIS
$SNP = Bio::Variation::SNP->new ();
DESCRIPTION
Inherits from Bio::Variation::SeqDiff and Bio::Variation::Allele, with additional methods that are (db)SNP specific (ie, refSNP/subSNP IDs,
batch IDs, validation methods).
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR
Allen Day <allenday@ucla.edu>
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
get/set-able methods
Usage : $is = $snp->method()
Function: for getting/setting attributes
Returns : a value. probably a scalar.
Args : if you're trying to set an attribute, pass in the new value.
Methods:
--------
id
type
observed
seq_5
seq_3
ncbi_build
ncbi_chr_hits
ncbi_ctg_hits
ncbi_seq_loc
ucsc_build
ucsc_chr_hits
ucsc_ctg_hits
heterozygous
heterozygous_SE
validated
genotype
handle
batch_id
method
locus_id
symbol
mrna
protein
functional_class
is_subsnp
Title : is_subsnp
Usage : $is = $snp->is_subsnp()
Function: returns 1 if $snp is a subSNP
Returns : 1 or undef
Args : NONE
subsnp
Title : subsnp
Usage : $subsnp = $snp->subsnp()
Function: returns the currently active subSNP of $snp
Returns : Bio::Variation::SNP
Args : NONE
add_subsnp
Title : add_subsnp
Usage : $subsnp = $snp->add_subsnp()
Function: pushes the previous value returned by subsnp() onto a stack,
accessible with each_subsnp().
Sets return value of subsnp() to a new Bio::Variation::SNP
object, and returns that object.
Returns : Bio::Varitiation::SNP
Args : NONE
each_subsnp
Title : each_subsnp
Usage : @subsnps = $snp->each_subsnp()
Function: returns a list of the subSNPs of a refSNP
Returns : list
Args : NONE
perl v5.14.2 2012-03-02 Bio::Variation::SNP(3pm)