Hello All,
I am brand new to the UNIX world and so far and very intrigued and enjoy scripting. This is just a new language for me. I would really like assistance with the below request. Any help would be greatly appreciated!
I want to create a flat file in Vi that has a header field and... (0 Replies)
Hi All
I am reading a huge file of size 2GB atleast. I am reading each line and cutting certain columns and writing it to another file.
Here is the logic.
int main()
{
string u_line;
string Char_List;
string u_file;
int line_pos;
string temp_form_u_file;
... (10 Replies)
Hi!
Thank you for the help yesterday
This is the finished product
There is one more thing I would like to do to it but I’m not to certain
On how to proceed I would like to log all output to a log in order to
Be able to roll back
This script is meant to be used in repairing a... (4 Replies)
can anyone help to share the knowledge on linux os improvement?
1) os account
- use window AD authentication, such as ldap, but how to set /etc/passwd, where to put user home?
2) user account activity
- how to log os user activity
share the idea and what tools can do that...thx (5 Replies)
Heyas
I've been working on my project TUI (Text User Interface) for quite some time now, its a hobby project, so nothing i sit in front of 8hrs/day.
Since the only 'real' programming language i knw is Visual Basic, based upon early steps with MS-Batch files. When i 'joined' linux 3 years ago,... (7 Replies)
Hello Coders
Some time ago i was asking about python and bash performances, and i was told i could post the regarding code, and someone would kindly help to make it faster (if possible).
If you have noted, i'm on the way to finalize, finish, stable TUI - Text(ual) User Interface.
It is a... (6 Replies)
Below script is used to search numeric data from around 400 files in a folder. I have 300 such folders. Need help in performance improvement in the script.
Below Script searches 20 such folders ( 300 files in each folder) simultaneously. This increases cpu utilization upto 90% What changes... (3 Replies)
Hi,
another little question...
"sn" is an array whose elements can vary from about 55,000 to about 150,000 elements. Each element consists of an integer between 0-255, eg: ${sn} contain the value: 103 . For a decrypt-procedure I need scroll all the elements 4 or 5 times. Here is an example of... (15 Replies)
Hi guys and gals...
MacBook Pro.
OSX 10.13.2, default bash terminal.
I have a flat file 1920 bytes in size of whitespaces only. I need to put every single whitespace character into a bash array cell.
Below are two methods that work, but both are seriously ugly.
The first one requires that I... (7 Replies)
Hello,
For several of our scripts we are using awk to search patterns in files with data from other files. This works almost perfectly except that it takes ages to run on larger files. I am wondering if there is a way to speed up this process or have something else that is quicker with the... (15 Replies)
Discussion started by: SDohmen
15 Replies
LEARN ABOUT DEBIAN
psequin
PSEQUIN(1) NCBI Tools User's Manual PSEQUIN(1)NAME
Psequin - submit sequences to Genbank, EMBL, and DDBJ
SYNOPSIS
Psequin [-b] [-bse] [-e] [-f filename] [-gc] [-h] [-oldaln] [-oldasn] [-oldgph] [-oldseq] [-oldsource] [-s] [-w] [-x]
DESCRIPTION
Psequin is a program designed to aid in the submission of sequences to the GenBank, EMBL, and DDBJ sequence databases. It was written at
the National Center for Biotechnology Information, part of the National Library of Medicine at the National Institutes of Health.
Psequin can assemble the essential elements of a GenBank record from simple FASTA-format text files. For example, the program obtains the
proper genetic code from an organism name, and automatically determines coding region intervals by back-translation from the protein
sequence. An on-line help window scrolls to the appropriate place as the user moves between and within data entry forms, giving relevant
details on what information is expected.
Psequin also contains a number of built-in validation functions for quality assurance. Features such as splice sites and coding region
translations are checked for accuracy or internal consistency. Double-clicking on an error message launches an appropriate editor by which
the user can correct any problems.
Psequin provides live, clickable views of the data in a variety of formats, including a report form, GenBank flatfile, EMBL flatfile, and a
graphical view. Double clicking on an item in any of these formats launches an editor for that item. The editor is capable of maintaining
correct feature table positions as the underlying sequence is edited. It can display features on the sequence during editing, and allows
feature intervals to be adjusted by direct manipulation.
OPTIONS -b Bioseq-set mode
-bse binseqentry mode
-e Entrez mode
-f filename
read from filename
-gc genome center mode
-h turn off automatic help
-oldaln
use old alignment reader
-oldasn
leave as old ASN.1
-oldgph
use old graphic view
-oldseq
use old sequence view
-oldsource
use old flat-file source format
-s subtool mode
-w workbench mode
-x read from standard input
AUTHOR
The National Center for Biotechnology Information.
SEE ALSO asnmacro(1), sbtedit(1), tbl2asn(1), /usr/share/doc/ncbi-tools-x11/sequin.htm, <http://www.ncbi.nlm.nih.gov/Sequin/>.
NCBI 2011-09-02 PSEQUIN(1)