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Special Forums UNIX and Linux Applications High Performance Computing Installation of MPI in a cluster of SMPs Post 302415004 by Sonia_ on Wednesday 21st of April 2010 01:39:53 PM
Old 04-21-2010
Installation of MPI in a cluster of SMPs

Hi,

I've installed mpich2 v. 1.2.1p1 on a cluster of dual-processors with the default options (in previous versions I used 'ssm' device, but now I use 'nemesis').

I'd like that every time I execute a job (e.g. with 2 MPI-processes), each job's process be dispatched on a different machine (until to complete the maximum number of machines) and not on a same machine, viz :

Job A with 2 process:

Machine 1:
CPU0 Empty
CPU1 Used
Machine 2:
CPU0 Empty
CPU1 Used

but now it is scheduled as

Machine 1:
CPU0 Used
CPU1 Used
Machine 2:
CPU0 Empty
CPU1 Empty

Regards!Smilie
 

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HWLOC-PS(1)							       hwloc							       HWLOC-PS(1)

NAME
hwloc-ps - List currently-running processes or threads that are bound SYNOPSIS
hwloc-ps [options] OPTIONS
-a list all processes, even those that are not bound to any specific part of the machine. -p --physical report OS/physical indexes instead of logical indexes -l --logical report logical indexes instead of physical/OS indexes (default) -c --cpuset show process bindings as cpusets instead of objects. -t --threads show threads inside processes. If -a is given as well, list all threads within each process. Otherwise, show all threads inside each process where at least one thread is bound. --whole-system Do not consider administration limitations. --pid-cmd <cmd> Append the output of the given command to each PID line. For each displayed process ID, execute the command <cmd> <pid> and append the first line of its output to the regular hwloc-ps line. DESCRIPTION
By default, hwloc-ps lists only those currently-running processes that are bound. If -t is given, processes that are not bound but contain at least one bound thread are also displayed, as well as all their threads. hwloc-ps displays process identifier, command-line and binding. The binding may be reported as objects or cpusets. By default, process bindings are restricted to the currently available topology. If some processes are bound to processors that are not available to the current process, they are ignored unless --whole-system is given. The output is a plain list. If you wish to annotate the hierarchical topology with processes so as to see how they are actual distributed on the machine, you might want to use lstopo --ps instead (which also only shows processes that are bound). The -a switch can be used to show all processes, if desired. EXAMPLES
If a process is bound, it appears in the default output: $ utils/hwloc-ps 4759 Core:0 myprogram If a process is not bound but 3 of his 4 threads are bound, it only appears in the thread-aware output: $ utils/hwloc-ps $ utils/hwloc-ps -t 4759 Machine:0 myprogram 4759 Machine:0 4761 PU:0 4762 PU:2 4765 PU:1 To display the binding of already running MPI processes (launched by Open MPI) and append their MPI rank (in MPI_COMM_WORLD) to each line: $ utils/hwloc-ps --pid-cmd myscript 29093 L1dCache:0 myprogram OMPI_COMM_WORLD_RANK=0 29094 L1dCache:2 myprogram OMPI_COMM_WORLD_RANK=1 29095 L1dCache:1 myprogram OMPI_COMM_WORLD_RANK=2 29096 L1dCache:3 myprogram OMPI_COMM_WORLD_RANK=3 where myscript is a bash script doing: #!/bin/sh cat /proc/$1/environ 2>/dev/null | xargs --null --max-args=1 echo | grep OMPI_COMM_WORLD_RANK SEE ALSO
hwloc(7), lstopo(1), hwloc-calc(1), hwloc-distrib(1) 1.7 Apr 07, 2013 HWLOC-PS(1)
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