Hi,
I have two Solaris machines.
1. SunOS X 5.8 Generic_108528-29 sun4u sparc SUNW,Sun-Blade-1500
2. SunOS Y 5.8 Generic_108528-13 sun4u sparc SUNW,Ultra-60
I am trying to buiild a project on both these machines. The Binary output file compiled on machine 2 runs on both the machines. Where... (0 Replies)
Not quite sure if this is the right section, but you guys know lots of good stuff. Is there a good OS X emulator that I can put on my Windows XP system?
I have PC's and at work/lab they run everything on mac's. Due to program compatibility issues, it would be nice if I could run mac software on... (2 Replies)
Hello all,
i want to install windows on mac and when i search i found that there is a program called Parallels Desktop to install windows on mac but i want it on the laptop not on the program does it work? or there is another anyway to install it on mac..??
Thanks in advanced (8 Replies)
Hi I am mainly using unix to run programs. My current problem is that I have a hard time installing programs (binary format) on my mac. I tried install and make but it does not work.. perhaps someone can help me out.
thanks (2 Replies)
Hi,
I have an shell script program in a remote linux machine which will do some specific monitoring functionality. Also, have some C executables in that machine.
From a windows machine, I want to run the shell script program (If possible using java).
I tried with SSH for this. but, in... (1 Reply)
Hello *nix specialists,
Im working for a non profit organisation in Germany to transport DSL over WLAN to people in areas without no DSL. We are using Linksys WRT 54 router with DD-WRT firmware There are at the moment over 180 router running but we have to change some settings next time. So my... (7 Replies)
Discussion started by: digidax
7 Replies
LEARN ABOUT DEBIAN
bio::seqio::largefasta
Bio::SeqIO::largefasta(3pm) User Contributed Perl Documentation Bio::SeqIO::largefasta(3pm)NAME
Bio::SeqIO::largefasta - method i/o on very large fasta sequence files
SYNOPSIS
Do not use this module directly. Use it via the Bio::SeqIO class.
DESCRIPTION
This object can transform Bio::Seq objects to and from fasta flat file databases.
This module handles very large sequence files by using the Bio::Seq::LargePrimarySeq module to store all the sequence data in a file. This
can be a problem if you have limited disk space on your computer because this will effectively cause 2 copies of the sequence file to
reside on disk for the life of the Bio::Seq::LargePrimarySeq object. The default location for this is specified by the File::Spec->tmpdir
routine which is usually /tmp on UNIX. If a sequence file is larger than the swap space (capacity of the /tmp dir) this could cause
problems for the machine. It is possible to set the directory where the temporary file is located by adding the following line to your
code BEFORE calling next_seq. See Bio::Seq::LargePrimarySeq for more information.
$Bio::Seq::LargePrimarySeq::DEFAULT_TEMP_DIR = 'newdir';
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHORS - Jason Stajich
Email: jason@bioperl.org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
next_seq
Title : next_seq
Usage : $seq = $stream->next_seq()
Function: returns the next sequence in the stream
Returns : A Bio::Seq::LargePrimarySeq object
Args : NONE
write_seq
Title : write_seq
Usage : $stream->write_seq(@seq)
Function: writes the $seq object into the stream
Returns : 1 for success and 0 for error
Args : Bio::Seq object
perl v5.14.2 2012-03-02 Bio::SeqIO::largefasta(3pm)