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Full Discussion: how to match a numers from file1 to file 2??Ps help me..
Top Forums Shell Programming and Scripting how to match a numers from file1 to file 2??Ps help me.. Post 302413198 by sureshraj on Thursday 15th of April 2010 01:10:27 AM
Old 04-15-2010
Quote:
Originally Posted by Nila
I didn't understand the following statement in your question.
The third column of file2 have a matching numbers of file 2.

my understanding is , Need to match the 3rd column of file2 with file1 content. You need a output from file2 matched lines with file1.

Give me your desired output.
Hi Nila thanks for reply,

simply say i have match the file1 & file 2.the file2 have data like as i said before..the third column of file2 have a matching numbers with file1.which means
Code:
rs6596796	6	120522	A	G	0.1058	0.09469	1.132	
rs1535053	6	126089	G	A	0.2155	0.2151	1.003	
rs12192106	6	137664	A	G	0.06956	0.07949	0.86	
rs6913464	6	139090	A	G	0.1702	0.1663	1.028	
rs9405480	6	144199	A	G	0.1869	0.1771	1.068	
rs9392299	6	148909	G	A	0.07122	0.06203	1.16	
rs1418708	6	150610	A	G	0.1386	0.1374	1.01	
rs1418707	6	150800	G	A	0.192	0.1631	1.219

the under lined numbers r have to match with file1...and my output should be like this..
Code:
rs6596796	6	120522	A	G	0.1058	0.09469	1.132	
rs1535053	6	126089	G	A	0.2155	0.2151	1.003	
rs12192106	6	137664	A	G	0.06956	0.07949	0.8657	
rs6913464	6	139090	A	G	0.1702	0.1663	1.028	
rs9405480	6	144199	A	G	0.1869	0.1771	1.068	
rs9392299	6	148909	G	A	0.07122	0.06203	1.16	
rs1418708	6	150610	A	G	0.1386	0.1374	1.01	
rs1418707	6	150800	G	A	0.192	        0.1631	1.219	3.

pls help me nila..this is very urgent..write a program for this task
Last edited by zaxxon; 04-15-2010 at 03:42 AM.. Reason: use code tags please, ty
 

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xzcmp

XZDIFF(1)							     XZ Utils								 XZDIFF(1)

NAME

       xzcmp, xzdiff, lzcmp, lzdiff - compare compressed files

SYNOPSIS

       xzcmp [cmp_options] file1 [file2]
       xzdiff [diff_options] file1 [file2]
       lzcmp [cmp_options] file1 [file2]
       lzdiff [diff_options] file1 [file2]

DESCRIPTION

       xzcmp  and  xdiff invoke cmp(1) or diff(1) on files compressed with xz(1), lzma(1), gzip(1), or bzip2(1).  All options specified are passed
       directly to cmp or diff.  If only one file is specified, then the files compared are file1 (which must have a suffix of	a  supported  com-
       pression  format)  and  file1 from which the compression format suffix has been stripped.  If two files are specified, then they are uncom-
       pressed if necessary and fed to cmp(1) or diff(1).  The exit status from cmp or diff is preserved.

       The names lzcmp and lzdiff are provided for backward compatibility with LZMA Utils.

SEE ALSO

       cmp(1), diff(1), xz(1), gzip(1), bzip2(1), zdiff(1)

BUGS

       Messages from the cmp(1) or diff(1) programs refer to temporary filenames instead of those specified.

Tukaani 							    2009-07-05								 XZDIFF(1)
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