Sponsored Content
Top Forums Shell Programming and Scripting Removing file lines that each match to a different patterns Post 302412991 by Jo_puzzled on Wednesday 14th of April 2010 07:31:08 AM
Old 04-14-2010
Great, thank you!
The grep works, but I was afraid it would also run too slowly. I just did a sample that searched 10,000 lines for 1,000 ids and it worked in about 2 seconds. I'm rather happy with that. I just hope the large files don't add too much load.

@jim mcnamara. The awk works wonderfully, but how do I get the data into a new file rather than print?

Thanks a lot for the help with the language problem. I'll definitely use that.
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

sed/awk help to match list of patterns and remove from org file

Hi, From the pattern mentioned below remove lines based on pattern range. Conditions 1 Look For all lines starting with ALTER TABLE and Ending with ; and contains the word MOVE.I wanto to remove these lines from the file sample below. Note : The above pattern list could be found in... (1 Reply)
Discussion started by: rajan_san
1 Replies

2. Shell Programming and Scripting

Searching patterns in 1 file and deleting all lines with those patterns in 2nd file

Hi Gurus, I have a file say for ex. file1 which has 3500 lines in it which are different account numbers and another file (file2) which has 230000 lines in it. I want to read all the lines in file1 and delete all those lines from file2 which has that same pattern as in file1. I am not quite... (4 Replies)
Discussion started by: toms
4 Replies

3. Shell Programming and Scripting

print lines which match multiple patterns

Hi, I have a text file as follows: 11:38:11.054 run1_rdseq avg_2-5 999988.0000 1024.0000 11:50:52.053 run3_rdrand 999988.0000 1135.0 128.0417 11:53:18.050 run4_wrrand avg_2-5 999988.0000 8180.5833 11:55:42.051 run4_wrrand avg_2-5 999988.0000 213.8333 11:55:06.053... (2 Replies)
Discussion started by: annazpereira
2 Replies

4. Shell Programming and Scripting

Match multiple patterns in a file and then print their respective next line

Dear all, I need to search multiple patterns and then I need to print their respective next lines. For an example, in the below table, I will look for 3 different patterns : 1) # ATC_Codes: 2) # Generic_Name: 3) # Drug_Target_1_Gene_Name: #BEGIN_DRUGCARD DB00001 # AHFS_Codes:... (3 Replies)
Discussion started by: AshwaniSharma09
3 Replies

5. Shell Programming and Scripting

Retrieve lines that match any occurence in a list of patterns

I have two files. The first containing a header and six columns of data. Example file 1: Number SNP ID dbSNP RS ID Chromosome Result_Call Physical Position 787066 SNP_A-8575395 RS6650104 1 NOCALL 564477 786872 SNP_A-8575125 RS10458597 1 AA ... (13 Replies)
Discussion started by: Selftaught
13 Replies

6. Shell Programming and Scripting

Match 2 different patterns and print the lines

Hi, i have been trying to extract multiple lines based on two different patterns as below:- file1 @jkm|kdo|aas012|192.2.3.1 blablbalablablkabblablabla sjfdsakfjladfjefhaghfagfkafagkjsghfalhfk fhajkhfadjkhfalhflaffajkgfajkghfajkhgfkf jahfjkhflkhalfdhfwearhahfl @jkm|sdf|wud08q|168.2.1.3... (8 Replies)
Discussion started by: redse171
8 Replies

7. UNIX for Dummies Questions & Answers

Match patterns from another file and tag

Hi all, I have a file , which has 6 tab delimited fields, with $3 and $4 subfielded with spaces. I wamt to match cols $2,$3,$4 of tmp1 with tmp2, ..and then flag the 5th col if found. tmp1 1756 Xerm XermA XermB XermC XermD AA TT AA GG A 1 1763 Xerm XermA XermB XermC... (3 Replies)
Discussion started by: senhia83
3 Replies

8. Shell Programming and Scripting

Removing multiple lines from input file, if multiple lines match a pattern.

GM, I have an issue at work, which requires a simple solution. But, after multiple attempts, I have not been able to hit on the code needed. I am assuming that sed, awk or even perl could do what I need. I have an application that adds extra blank page feeds, for multiple reports, when... (7 Replies)
Discussion started by: jxfish2
7 Replies

9. Shell Programming and Scripting

awk to print match or non-match and select fields/patterns for non-matches

In the awk below I am trying to output those lines that Match between file1 and file2, those Missing in file1, and those missing in file2. Using each $1,$2,$4,$5 value as a key to match on, that is if those 4 fields are found in both files the match, but if those 4 fields are not found then missing... (0 Replies)
Discussion started by: cmccabe
0 Replies

10. Shell Programming and Scripting

Selecting text on multiple lines, then removing a beginning and end patterns

I have a file similar to the below. I am selecting only the paragraphs with @inlineifset. I am using the following command sed '/@inlineifset/,/^ *$/!d; s/@inlineifset{mrg, @btpar{@//' $flnm >> $ofln This produces @section Correlations between seismograms,,,,}} ... (5 Replies)
Discussion started by: Danette
5 Replies
GREP(1) 						      General Commands Manual							   GREP(1)

NAME
grep - search a file for a pattern SYNOPSIS
grep [ option ... ] pattern [ file ... ] DESCRIPTION
Grep searches the input files (standard input default) for lines (with newlines excluded) that match the pattern, a regular expression as defined in regexp(6). Normally, each line matching the pattern is `selected', and each selected line is copied to the standard output. The options are -c Print only a count of matching lines. -h Do not print file name tags (headers) with output lines. -i Ignore alphabetic case distinctions. The implementation folds into lower case all letters in the pattern and input before interpre- tation. Matched lines are printed in their original form. -l (ell) Print the names of files with selected lines; don't print the lines. -L Print the names of files with no selected lines; the converse of -l. -n Mark each printed line with its line number counted in its file. -s Produce no output, but return status. -v Reverse: print lines that do not match the pattern. Output lines are tagged by file name when there is more than one input file. (To force this tagging, include /dev/null as a file name argument.) Care should be taken when using the shell metacharacters $*[^|()= and newline in pattern; it is safest to enclose the entire expression in single quotes '...'. SOURCE
/sys/src/cmd/grep.c SEE ALSO
ed(1), awk(1), sed(1), sam(1), regexp(6) DIAGNOSTICS
Exit status is null if any lines are selected, or non-null when no lines are selected or an error occurs. GREP(1)
All times are GMT -4. The time now is 05:38 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy