Hi All,
Please help me out with a script which checks whether a given file say abc.txt is in ASCII format and data is tab-delimited. If the condition doesn't satisfy then it should generate error code "100" for file not in ASCII format and "105" if it is not in tab-delimited format.
If the... (9 Replies)
Hi Experts
I am very new to perl and need to make a script using perl.
I would like to remove blanks in a text tab delimited file in in a specfic column range ( colum 21 to column 43) sample input and output shown below :
Input:
117 102 650 652 654 656
117 93 95... (3 Replies)
I have a large text-file with tab-delimited genetic data that looks like:
KSC112 KSC234 0 0 1 1 A G C T
I simply wan to delete the first column, but since the file has 600 000 columns, it is not possible with awk (seems to be limited at 32k columns).
Does anyone have an idea how to do this? (2 Replies)
Hi,
I do have a TAB delimted text file with the following format.
1 (- identifier of each group. this text is not present in the file only number)
1 3 4 65 56 WERTF
2 3 4 56 56 GHTYHU
3 3 5 64 23 VMFKLG
2
1 3 4 65 56 DGTEYDH
2 3 4 56 56 FJJJCKC
3 3 5 64 23 FNNNCHD
3
1 3 4 65 56 JDHJDH... (9 Replies)
Hello Gurus,
I have a text file containing nearly 12,000 tab delimited characters with 4000 rows. If the file size is small, excel can convert the text into coloumns. However, the file that I have is very big. Can some body help me in solving this problem?
The input file example,
... (6 Replies)
I want to add a new column to a tab delimited text file. It will be the first column and it will just be 1's. How do I go about doing that? Thanks! (1 Reply)
I have a text file that made using text editor in Ubuntu. However the text file is not being recognized as space or tab delimited, the formatting seems to be messed up. How can I convert the text file into tab delimited format? (3 Replies)
Hi Experts,
I have a tab deliminated file as below
myfile.txt
Local Group Memberships *Administrators *Guests
I need data in below format starting from 4th position.
myfile1.txt
Administrators Guests
the above one is just an example and there could... (15 Replies)
Hi, I have a rquirement in unix as below .
I have a text file with me seperated by | symbol and i need to generate a excel file through unix commands/script so that each value will go to each column.
ex:
Input Text file:
1|A|apple
2|B|bottle
excel file to be generated as output as... (9 Replies)
Discussion started by: raja kakitapall
9 Replies
LEARN ABOUT DEBIAN
csv2mipe
CSV2MIPE(1) User Contributed Perl Documentation CSV2MIPE(1)NAME
csv2mipe.pl - Generates MIPE file based on 3 tab-delimited files
based on MIPE version v1.1
arguments: * tab-delimited file with PCR-level data
* tab-delimited file with SNP-level data
* tab-delimited file with assay-level data
Columns in file with PCR-level data:
pcr_id
pcr_modified (might be multiple, divided by semi-colon ";")
pcr_project (might be multiple, divided by semi-colon ";")
pcr_researcher (might be multiple, divided by semi-colon ";")
pcr_species
source_type
source_id
design_seq
primer1_oligo
primer1_seq
primer1_tm
primer2_oligo
primer2_seq
primer2_tm
design_remark (might be multiple, divided by semi-colon ";")
use_seq
use_revcomp
use_remark (might be multiple, divided by semi-colon ";")
pcr_remark (might be multiple, divided by semi-colon ";")
Columns in file with SNP-level data:
pcr_id
snp_id
snp_pos
snp_amb
snp_remark (might be multiple, divided by semi-colon ";")
Columns in file with assay-level data:
pcr_id
snp_id
assay_id
assay_type
assay_enzyme
assay_oligo
assay_specific
assay_tail
assay_strand
assay_remark (might be multiple, divided by semi-colon ";")
SYNOPSIS
csv2mipe.pl <pcr_file.csv> <snp_file.csv> <assay_file.csv>
ADDITIONAL INFO
See http://mipe.sourceforge.net
AUTHOR
Jan Aerts (jan.aerts@bbsrc.ac.uk)
perl v5.14.2 2005-07-20 CSV2MIPE(1)