sed ' s/PAN/TAN/g ' <i/p> > <o/p>
sed ' s/^M/^M/g ' <i/p> > <o/p> (1st ^M is Ctrl+V+M, 2nd should be line feed/next line)
There are errors in the samples posted which would perhaps be more visible if the lines were posted in code tags.
1) There is no "output filename" parameter to "sed". See "man sed".
2) There are excess space characters in the commands posted.
Most of these carriage-return issues arise when a text file is created on a M$ platform and the copied to a
unix platform using a file transfer method which does not convert the file (e.g. binary mode ftp).
The normal repair involves running unix command "dos2unix" or "dos2ux" to convert the text file.
When foreign character sets are involved it can be better to convert the file with "tr" or an "awk" program.
Last edited by methyl; 04-08-2010 at 08:01 PM..
Reason: layout
If anyone can give me some ideas on this it would be great. What I'm trying to do is to have emails be sent to my unix account. Once they are emailed to the unix account, I want to use the text in the subject field to invoke a shell script, so basically I need to find a way that I can... (4 Replies)
Hi,
I am facing a problem to pass command line arguments that looks like
<script name> aa bb "cc" dd "ee"
I want to pass all 5 elements include the " (brackets). when I print the @ARGV the " disappear. I hope I explain myself
Regards,
Ziv (4 Replies)
Hello All,
i am known to the limitation of different shells while passing more than 9 command line arguments
i just tried the example below
i do see my current shell is tcsh
echo $SHELL
/bin/tcsh
so if i make my script executable and run it
output is
... (6 Replies)
Hi... can anyone please help me out in using the CASE and command line argument in shell script... i am bit new to shell scripting...below i have explained my proble with example...
say i have an executable file with name 'new1.sh' and there are 3 functions in it a(), b() and c()....and there... (5 Replies)
basically i'm tired of hitting the left arrow a few dozen times when correcting a mistake or modifying a history command
i'd like to use vim style key shortcuts while on the command line so that a 55 moves the cursor 55 places to the left...
and i want all the other vi goodies, search of... (3 Replies)
Hello,
I know this is a situation about the single quote and double literal, but I could not figure out after many search.
I need to loop through thousands of different BACs sequencing to optimize kmer individually.
IN=/PATH/TO/INPUT/FILES
for sample in S{01..1096}
do
run_program... (9 Replies)
I need to write a shell script, when I run that script I should pass those arguments if not, then script should not run and pass the error message like
invalid option - - should pass the argument.
and Exit from the script
https://www.unix.com/images/misc/progress.gif (1 Reply)
I need to write a shell script, when I run that script I should pass those arguments if not, then script should not run and pass the error message like
invalid option - - should pass the argument.
and Exit from the script (8 Replies)
Hi,
I would like to use a shell variable $amp in my perl command line.
for fa in $WORKSPACE/*.fa; do
amp=`grep ">.*" $fa | sed -e's#>\(.*\)#\1#g'`
ampsam="$WORKSPACE/$base/$base.$amp.sam"
sqheader=`grep "^@SQ.*SN:$amp.*" $sam`
printf "$sqheader\n" >> $ampsam
... (3 Replies)
Hello,
I have symbolic links to a bunch of directories (all starting with the letter X) in the cwd. When I run the following on the command line, I get the list as I want it.
ls -1 X* > dir.list
However when I run it in a shell script like given below, it lists all the files in each of... (3 Replies)