Note: C_No :: a/a=most frequent similar double letter in ID1 then it will be = 1
b/b=second most..................................ID1 then it will be = 3
a/b=...................dissimilar....................ID1 ...................= 2
Same applies to all IDnames but IDtypes may change
Hello all,
I want to transpose the rows of a file to the columns (every characters include spaces), i.e.:
input:
abcdefg
123 456
output:
a1
b2
c3
d
e4
f5
g6
I wrote a script:
#!/bin/csh -f (15 Replies)
Hi ALL
I have one input file say FILE1 which looks as below.
a=1
b=2
c=3
a=4
b=5
c=6
.
.
.
Here a,b,c...etc are variable names.
The output file(FILE2) should look like
1,2,3
4,5,6
.....
..... (5 Replies)
Hi I have an input file and I want to transpose it but I need to take care that if any field is missing for a record it should be popoulated with space for that field - using a shell script
INFILE
----------
emp=1
sal=2
loc=abc
emp=2
sal=21
sal=22
loc=xyz
emp=5
loc=abc
OUTFILE... (10 Replies)
Hi,
I have a file like this
a b c
d e f
g h i
j k l
Case1:
I want to transpose the whole file
Output1
a d g j
b e h k
c f i l
Case2
Transpose a specific column - Say 3rd (6 Replies)
Hi Friends,
I have a file with a structure like this:
<file1.csv>
field1,field2,field3,field4,field5,field6,field7,field8,field9,field10,field11,field12
Few Salient points on the file's structure
(1)The fields from field1 to field6 is fixed and they would always be present in the file... (2 Replies)
Hello,
I have a text file with 148 rows and 2532691 columns. I need to transpose the data. The command that I am using is
awk '
{
for (i=1; i<=NF; i++) {
a = $i
}
}
NF>p { p = NF }
END {
for(j=1; j<=p; j++) {
str=a
for(i=2; i<=NR; i++){
... (6 Replies)
Hello,
I have a file which looks like this
Input:
Sample Genotype Assay Well plate
Sample1 T xx A01 1
Sample2 T xx A01 2
Sample3 T xx A01 3
Sample4 T xx A02 4
Sample5 T xx A02 5
Sample6 T xx A02 ... (4 Replies)
Discussion started by: nans
4 Replies
LEARN ABOUT DEBIAN
go-filter-subset
GO-FILTER-SUBSET(1p) User Contributed Perl Documentation GO-FILTER-SUBSET(1p)NAME
go-filter-subset.pl - extracts a subgraph from an ontology file
SYNOPSIS
go-filter-subset.pl -id GO:0003767 go.obo
go-filter-subset.pl -id GO:0003767 -to png go.obo | xv -
go-filter-subset.pl -filter_code 'sub{shift->name =~ /transcr/}' go.obo
DESCRIPTION
Exports a subset of an ontology from a file. The subset can be based on a specified set of IDs, a preset "subset" filter in the ontology
file (eg a GO "slim" or subset), or a user-defined filter.
The subset can be exported in any format, including a graphical image
ARGUMENTS -id ID
ID to use as leaf node in subgraph. All ancestors of this ID are included in the exported graph (unless -partial is set)
Multiple IDs can be passed
-id ID1 -id ID2 -id ID3 ....etc
-subset SUBSET_ID
Extracts a named subset from the ontology file. (only works with obo format files). For example, a specific GO slim
ONLY terms belonging to the subset are exported - the -partial option is automatically set
-namespace NAMESPACE
only terms in this namespace
-filter_code SUBROUTINE
advanced option
A subroutine with which the GO::Model::Term object is tested for inclusion in the subgraph (all ancestors are automatically included)
You should have an understanding of the go-perl object model before using this option
Example:
go-filter-subset -filter_code 'sub {shift->namespace eq 'molecular_function'}' go.obo
(the same things can be achieved with the -namespace option)
-partial
If this is set, then only terms that match the user query are included. Parentage is set to the next recursive parent node in the
filter
For example, with the -subset option: if X and Y belong to the subset, and Z does not, and X is_a Z is_a Y, then the exported graph
withh have X is_a Y
-use_cache
If this switch is specified, then caching mode is turned on.
With caching mode, the first time you parse a file, then an additional file will be exported in a special format that is fast to parse.
This file will have the same filename as the original file, except it will have the ".cache" suffix.
The next time you parse the file, this program will automatically check for the existence of the ".cache" file. If it exists, and is
more recent than the file you specified, this is parsed instead. If it does not exist, it is rebuilt.
DOCUMENTATION
<http://www.godatabase.org/dev>
perl v5.14.2 2010-05-12 GO-FILTER-SUBSET(1p)