1. if the 1st row IDs of input1 (ID1/ID2.....) is equal to any IDNames of input2
print all relevant values together as defined in the output.
2. A bit tricky part is IDno in the output. All we need to do is numbering same kind of
letters as 1 (aa of ID1) and different letters as 2 (ab of ID1). And 3 is second frequent same kind of letter (bb of ID1)
Hope I made every thing clear.
input1
input2
output
---------- Post updated at 08:20 PM ---------- Previous update was at 03:49 AM ----------
Last edited by ruby_sgp; 03-25-2010 at 09:29 PM..
Reason: adding pseudocode
I have to merge two files:
The files are having the same format like
A0this is first line
TOlast line
silmilarly other lines.
I have to search for A0 line in the second file also and then put the data in the third file under A0 heading ,then for A1 and so on.
A0 portion will be treminated... (1 Reply)
Hi
I am having files with date and time stamp as the folder names like 200906051400,200906051500,200906051600 .....hence everyday 24 files will be generated
i need to do certain things on this 24 files daily
file contains the data like
200906050016370 0 1244141195225298lessrv3 ... (13 Replies)
Hi,
I have a file f1 having the contents as below
select (<condn>) from dual
I have another file f2 having the contents as below
1,
2,
3
I want to replace <condn> in f1 with the contents of f2
I tried using sed like this
sed "s:<condn>:`cat f2`:g" f1
The above command resulted in sed:... (3 Replies)
Hi Friends,
I am new to UNIX. I need to merge all the files(to FINAL.txt) in single directory based one condition. Out of all the files one of file will have specific value like :GF01: at any where in the file.
so the file which is having :GF01: should be appended at the last.
EX:... (5 Replies)
Condition1;
If NPID and IndID of both input1 and input2 are same take all the vaues relevant to them and print together as output
Condition2;
IDNo in output: Take the highly repeated same letter of similar NPID-IndID as *1*
Second highly repeated same letter... (0 Replies)
I had two files file1 and file2. I want a o/p file(file3) like below using first column as ref. Pls give suggestion ass join is not working as the number of lines in each file is nealry 5 C?
file1
---------------------
404000324810001 Y
404000324810004 N
404000324810008 Y
404000324810009 N... (1 Reply)
Hi All,
I have a text file (code_data.txt) with the followig data.
AMAR AB123456 XYZ
KIRAN CB789 ABC
RAJ CS78890 XYZ
KAMESH A33535335 ABC
KUMAR MD678894 MAT
RITESH SR3535355... (26 Replies)
Using Linux (bash), I have two files which contain information about berries. Example:
file1.txt:
Blueberry blue 14
Raspberry red 12
Blackberry dark 4
file2.txt
Blackberry sour 4 3
Blueberry tasty 12 78
Strawberry yummy 33 88
I want to merge these two files into one. The desired... (5 Replies)
The below awk will filter a list of 30,000 lines in the tab-delimited file. What I am having trouble with is adding a condition to SVTYPE=CNV
that will only print that line if CI= must be >.05 .
The other condition to add is if SVTYPE=Fusion, then in order to print that line
READ_COUNT must... (3 Replies)
I am trying to use awk to update the below tab-delimited file based on 5 different rules/conditions. The final output is also
tab-delimited and each line in the file will meet one of the conditions. My attemp is below as well though I am not very confident in it. Thank you :).
Condition 1: The... (10 Replies)
Discussion started by: cmccabe
10 Replies
LEARN ABOUT DEBIAN
go-filter-subset
GO-FILTER-SUBSET(1p) User Contributed Perl Documentation GO-FILTER-SUBSET(1p)NAME
go-filter-subset.pl - extracts a subgraph from an ontology file
SYNOPSIS
go-filter-subset.pl -id GO:0003767 go.obo
go-filter-subset.pl -id GO:0003767 -to png go.obo | xv -
go-filter-subset.pl -filter_code 'sub{shift->name =~ /transcr/}' go.obo
DESCRIPTION
Exports a subset of an ontology from a file. The subset can be based on a specified set of IDs, a preset "subset" filter in the ontology
file (eg a GO "slim" or subset), or a user-defined filter.
The subset can be exported in any format, including a graphical image
ARGUMENTS -id ID
ID to use as leaf node in subgraph. All ancestors of this ID are included in the exported graph (unless -partial is set)
Multiple IDs can be passed
-id ID1 -id ID2 -id ID3 ....etc
-subset SUBSET_ID
Extracts a named subset from the ontology file. (only works with obo format files). For example, a specific GO slim
ONLY terms belonging to the subset are exported - the -partial option is automatically set
-namespace NAMESPACE
only terms in this namespace
-filter_code SUBROUTINE
advanced option
A subroutine with which the GO::Model::Term object is tested for inclusion in the subgraph (all ancestors are automatically included)
You should have an understanding of the go-perl object model before using this option
Example:
go-filter-subset -filter_code 'sub {shift->namespace eq 'molecular_function'}' go.obo
(the same things can be achieved with the -namespace option)
-partial
If this is set, then only terms that match the user query are included. Parentage is set to the next recursive parent node in the
filter
For example, with the -subset option: if X and Y belong to the subset, and Z does not, and X is_a Z is_a Y, then the exported graph
withh have X is_a Y
-use_cache
If this switch is specified, then caching mode is turned on.
With caching mode, the first time you parse a file, then an additional file will be exported in a special format that is fast to parse.
This file will have the same filename as the original file, except it will have the ".cache" suffix.
The next time you parse the file, this program will automatically check for the existence of the ".cache" file. If it exists, and is
more recent than the file you specified, this is parsed instead. If it does not exist, it is rebuilt.
DOCUMENTATION
<http://www.godatabase.org/dev>
perl v5.14.2 2010-05-12 GO-FILTER-SUBSET(1p)