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Shell Programming and Scripting
Extract specific content from data and rename its header problem asking
Post 302406886 by malcomex999 on Wednesday 24th of March 2010 05:59:26 AM
03-24-2010
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10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
My input file:
>sequence_1
ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC
ASDSFDFFDFDFFWERERERERFSDFESFSFD
>sequence_2
ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD
ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS
>sequence_3
VEDFGSDGSDGSDGSDGSDGSDGSDG
dDFSDFSDFSDFSDFSDFSDFSDFSDF
SDGFDGSFDGSGSDGSDGSDGSDGSDG
My... (22 Replies)
Discussion started by: patrick87
22 Replies
2. Shell Programming and Scripting
My input:
>seq_1
DSASSTRRARRRRTPRTPSLRSRRSDVTCS
>seq_3
RMRLRRWRKSCSERS*RRSN
>seq_8
RTTGLSERPRLPTTASRSISSRWTR
>seq_10
NELPLEKGSLDSISIE
>seq_9
PNQGDAREPQAHLPRRQGPRDRPLQAYA+
QVQHRRHDHSRTQH*LCRRRQREDCDRLHR
>seq_4
DRGKGQAGCRRPQEGEALVRRCS>seq_6
FA*GLAAQDGEA*SGRG
My output: Extract all... (22 Replies)
Discussion started by: patrick87
22 Replies
3. Shell Programming and Scripting
My input:
Data name: ABC001
Data length: 1000
Detail info
Data Direction Start_time End_time Length
1 forward 10 100 90
1 forward 15 200 185
2 reverse 50 500 450
Data name: XFG110
Data length: 100
Detail info
Data Direction Start_time End_time Length
1 forward 50 100 50 ... (11 Replies)
Discussion started by: patrick87
11 Replies
4. Shell Programming and Scripting
Input file:
>TRACK: Position: 1 TYPE: 1 Pos:
SVAVPQRHHPGGTVFREPIIIPAIPRLVPGWNKPIIIGRHAFGDQYRATDRVIPGPGKLE
LVYTPVNGEPETVKVYDFQGGGIAQTQYNTDESIRGFAHASFQMALLKGLPLYMSTKNTI
LKRYDGRFKDIFQEIYESTYQKDFEAKNLWYEHRLIDDMVAQMIKSEGGFVMALKNYDGD
>TRACK: Position: 1 TYPE: 2 Pos:
FAHASFQMALLKGLPLYMS... (8 Replies)
Discussion started by: patrick87
8 Replies
5. Shell Programming and Scripting
Input file:
>position_10 sample:68711 coords:5453-8666 number:3 type:complete len:344
MSINQYSSDFHYHSLMWQQQQQQQQHQNDVVEEKEALFEKPLTPSDVGKLNRLVIPKQHA
ERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDA
NRTS*
>position_4 sample:68711 coords:553-866 number:4 type:partial len:483... (7 Replies)
Discussion started by: patrick87
7 Replies
6. Shell Programming and Scripting
Dear all-
I have a requirement to send an email via email with body content which looks something below-
Email body contents
--------------------
RequestType: Update
DateAcctOpened: 1/5/2010
Note that header information and data content should be normal text..
Please advice on... (5 Replies)
Discussion started by: sureshg_sampat
5 Replies
7. Shell Programming and Scripting
Input:
21 templeta parent 35718 36554 . - . ID=parent_cluster_50.21.11; Name=Partial%20parent%20for%20training%20set;
21 templeta kids 35718 36554 . - . ID=_52; Parent=parent_cluster_5085.21.11;
21 templeta ... (7 Replies)
Discussion started by: patrick87
7 Replies
8. Shell Programming and Scripting
I got long list of reference file
>data_tmp_number_22
>data_tmp_number_12
>data_tmp_number_20
.
.
Input file:
>sample_data_1 Math, 5, USA, tmp
SDFEWRWERWERWRWER
FSFDSFSDFSDGSDGSD
>sample_data_2 Math, 15, UK, tmp
FDSFSDFF
>sample_data_3 Math, 50, USA, tmp
ARQERREQR
.
.
Desired... (7 Replies)
Discussion started by: perl_beginner
7 Replies
9. Shell Programming and Scripting
Hi all,
I am working on a small prog..
i have a file.txt which contains random data...
K LINES V4 ADD CODE `COMPANY` ADD CODE `DISTRIBUTOR` SEQ NAME^K LINES V5 SEQ NAME^K LINES V6 ADD `PACK-LDATE` SEQ NAME^K^KCOMMAND END^KHEADINFO... (1 Reply)
Discussion started by: mukeshguliao
1 Replies
10. Shell Programming and Scripting
Input file:
data21_result1
data23_result1
data43_result1
data43_result2
data43_result3
data3_result1
.
.
data9_result1
Desired output
data1_result1
data2_result1
data3_result1
data3_result2
data3_result3
data4_result1 (3 Replies)
Discussion started by: perl_beginner
3 Replies
LEARN ABOUT CENTOS
perl::critic::policy::builtinfunctions::prohibitlvaluesubstr
Perl::Critic::Policy::BuiltinFunctions::ProhibitLvalueSuUser(Contributed Perl DocumPerl::Critic::Policy::BuiltinFunctions::ProhibitLvalueSubstr(3) NAME
Perl::Critic::Policy::BuiltinFunctions::ProhibitLvalueSubstr - Use 4-argument "substr" instead of writing "substr($foo, 2, 6) = $bar". AFFILIATION
This Policy is part of the core Perl::Critic distribution. DESCRIPTION
Conway discourages the use of "substr()" as an lvalue, instead recommending that the 4-argument version of "substr()" be used instead. substr($something, 1, 2) = $newvalue; # not ok substr($something, 1, 2, $newvalue); # ok The four-argument form of "substr()" was introduced in Perl 5.005. This policy does not report violations on code which explicitly specifies an earlier version of Perl (e.g. "use 5.004;"). CONFIGURATION
This Policy is not configurable except for the standard options. SEE ALSO
"substr" in perlfunc (or "perldoc -f substr"). "4th argument to substr" in perl5005delta AUTHOR
Graham TerMarsch <graham@howlingfrog.com> COPYRIGHT
Copyright (c) 2005-2011 Graham TerMarsch. All rights reserved. This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself. perl v5.16.3 2014-06-09 Perl::Critic::Policy::BuiltinFunctions::ProhibitLvalueSubstr(3)