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Full Discussion: How to compare 2 files & get specific value & replace it in other file.
Top Forums UNIX for Dummies Questions & Answers How to compare 2 files & get specific value & replace it in other file. Post 302405535 by radoulov on Friday 19th of March 2010 05:25:18 AM
Old 03-19-2010
It's because I'm taking the date and time from this record:

Code:
200912092129A SIMEULUE, INDONESIA

In your data there are two records that contain the date and time for every paragraph:

Code:
200912092129A SIMEULUE, INDONESIA

  Date: 2009/12/ 9   Centroid Time: 21:29: 7.0 GMT
  Lat=   2.52  Lon=  95.75
  Depth= 12.0   Half duration= 2.4
  Centroid time minus hypocenter time:  4.0
  Moment Tensor: Expo=25  0.348 -0.235 -0.114 0.744 -0.846 0.162 
  Mw = 6.0    mb = 5.9    Ms = 5.9   Scalar Moment = 1.18e+25
  Fault plane:  strike=293    dip=9   slip=66
  Fault plane:  strike=138    dip=82   slip=94

The first one is easier to parse.
 

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LEARN ABOUT DEBIAN

vcf-compare

VCF-COMPARE(1)							   User Commands						    VCF-COMPARE(1)

NAME

       vcf-compare - compare bgzipped and tabix indexed VCF files

SYNOPSIS

       compare-vcf [OPTIONS] file1.vcf file2.vcf ...

DESCRIPTION

       About: Compare bgzipped and tabix indexed VCF files. (E.g. bgzip file.vcf; tabix -p vcf file.vcf.gz)

OPTIONS

       -c, --chromosomes <list|file>
	      Same as -r, left for backward compatibility. Please do not use as it will be dropped in the future.

       -d, --debug
	      Debugging information. Giving the option multiple times increases verbosity

       -H, --cmp-haplotypes
	      Compare haplotypes, not only positions

       -m, --name-mapping <list|file>
	      Use  with -H when comparing files with differing column names. The argument to this options is a comma-separated list or one mapping
	      per line in a file. The names are colon separated and must appear in the same order as the files on the command line.

       -R, --refseq <file>
	      Compare the actual sequence, not just positions. Use with -w to compare indels.

       -r, --regions <list|file>
	      Process the given regions (comma-separated list or one region per line in a file).

       -s, --samples <list>
	      Process only the listed samples. Excluding unwanted samples may increase performance considerably.

       -w, --win <int>
	      In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be  it  a
	      SNP or an indel).

       -h, -?, --help
	      This help message.

vcf-compare 0.1.5						     July 2011							    VCF-COMPARE(1)
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