02-22-2010
I am running Redhat Enterprise 5 and running gmail as the MTA. Yes, I can send an email via the command line using the mail command.
The real problem I'm having now is I really don't know how to tie all the bits and pieces together which I need to make this email monitoring script work
I know it's a big ask (maybe too big) for someone to provide more specific and final code which I can use.
Thanking you all for your advice and assistance. It's a steep learning curve for me!
Regards,
Sallyanne
10 More Discussions You Might Find Interesting
1. UNIX for Dummies Questions & Answers
I'm trying to write a simple unix script that will delete files after 30 days of being created. I've never done this before but conceptually it sounds easy. Here is what I'm trying to do:
Get System Date
Get File Date
If (sysdate-filedate>30days)
rm file
All of these files are contained... (1 Reply)
Discussion started by: tamdoankc
1 Replies
2. Shell Programming and Scripting
I'm getting the following errors when I try to write a script to unzip some zip files. When I use the free trial copy of the commerical winzip program, however, they work fine. When I use -l or -t on unzip it indicates no errors. When I use the -o switch interactively from the bash command line it... (1 Reply)
Discussion started by: siegfried
1 Replies
3. Shell Programming and Scripting
Could anyone help me to Write a script in BASH Shell to determine the percentage of system disk space you are using. (1 Reply)
Discussion started by: boris
1 Replies
4. UNIX for Dummies Questions & Answers
how would i write a shell script to show the number of lines in which int variable appears in a c++ program. (3 Replies)
Discussion started by: deadleg
3 Replies
5. Shell Programming and Scripting
#!/bin/csh
echo hello world
this is what i got in a text file called ss1.
i type "chmod 755 ss1.txt" to make it executable.
then when i type
ss1
or
ss1.txt
it says
"ss1 command not found"
what am i doing wrong? (19 Replies)
Discussion started by: pantelis
19 Replies
6. Shell Programming and Scripting
Hi,
I am very new to scripting and I wanted to write a unix shell script which can give me,
1)number of cpu's in a box
2)number of cores per cpu
3)total number of cores in abox (ie multiplying 1&2)
I am also trying to figure out how to check if hyper-threading is enabled in the... (8 Replies)
Discussion started by: steven12
8 Replies
7. Shell Programming and Scripting
Hello all!
This is my first post and I'm very new to programming. I would like help creating a simple perl or bash script that I will be using in my work as a junior bioinformatician.
Essentially, I would like to take a tab-delimted or .csv text with 3 columns and write them to a "3D" matrix:
... (16 Replies)
Discussion started by: torchij
16 Replies
8. Shell Programming and Scripting
Im trying to write a script using the host command but its not working properly. I cant understand what Im doing wrong. When I use it at the command prompt, it works fine. But its being used actually in the script, it says its not found: 2 SERVFAIL. Can anyone help me? Here's what I have so far: no... (6 Replies)
Discussion started by: relsha
6 Replies
9. Shell Programming and Scripting
Hi,
I need to automate some repacking tasks of a boot image for Android
When in command line, I can use this command:
mkbootfs /path/to/root > /path/to/ramdisk-recovery.cpio;However, if I try to run the command from a shell script under Ubuntu, it fails and outputs to stdout instead of the... (27 Replies)
Discussion started by: Phil3759
27 Replies
10. Shell Programming and Scripting
Hello,
I want to write a bash script to delete the content after '#'. However, if '#' appears in a string with "", ignore this. For example,
input file:
test #delete
"test #not delete"
Output file:
test
"test #not delete"
Does anyone know how to write this script?
Thanks (1 Reply)
Discussion started by: jeffwang66
1 Replies
LEARN ABOUT DEBIAN
cd-hit-para
CD-HIT-PARA.PL(1) User Commands CD-HIT-PARA.PL(1)
NAME
cd-hit-para.pl - divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs
SYNOPSIS
cd-hit-para.pl options
DESCRIPTION
This script divide a big clustering job into pieces and submit jobs to remote computers over a network to make it parallel. After
all the jobs finished, the script merge the clustering results as if you just run a single cd-hit or cd-hit-est.
You can also use it to divide big jobs on a single computer if your computer does not have enough RAM (with -L option).
Requirements:
1 When run this script over a network, the directory where you
run the scripts and the input files must be available on all the remote hosts with identical path.
2 If you choose "ssh" to submit jobs, you have to have
passwordless ssh to any remote host, see ssh manual to know how to set up passwordless ssh.
3 I suggest to use queuing system instead of ssh,
I currently support PBS and SGE
4 cd-hit cd-hit-2d cd-hit-est cd-hit-est-2d
cd-hit-div cd-hit-div.pl must be in same directory where this script is in.
Options
-i input filename in fasta format, required
-o output filename, required
--P program, "cd-hit" or "cd-hit-est", default "cd-hit"
--B filename of list of hosts,
requred unless -Q or -L option is supplied
--L number of cpus on local computer, default 0
when you are not running it over a cluster, you can use this option to divide a big clustering jobs into small pieces, I suggest you
just use "--L 1" unless you have enough RAM for each cpu
--S Number of segments to split input DB into, default 64
--Q number of jobs to submit to queue queuing system, default 0
by default, the program use ssh mode to submit remote jobs
--T type of queuing system, "PBS", "SGE" are supported, default PBS
--R restart file, used after a crash of run
-h print this help
More cd-hit/cd-hit-est options can be speicified in command line
Questions, bugs, contact Weizhong Li at liwz@sdsc.edu
cd-hit-para.pl 4.6-2012-04-25 April 2012 CD-HIT-PARA.PL(1)