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Full Discussion: Manipulating Data
Homework and Emergencies Emergency UNIX and Linux Support Manipulating Data Post 302392856 by awknerd on Friday 5th of February 2010 09:38:47 PM
Old 02-05-2010
Manipulating Data

Hi. I haven't had to write bash scripts in a long time and have a simple task to do, but need some help:

Input:

chrY:22627291-22651542
chrY:23045932-23070172
chrY:23684890-23696359
chrY:25318610-25330083
chrY:25451096-25462570
chr10:1054847-1061799
chr10:1058606-1080131
chr10:1075964-1085061

Desired Output:

chrY 22627291 22651542
chrY 23045932 23070172
chrY 23684890 23696359
chrY 25318610 25330083
chrY 25451096 25462570
chr10 1054847 1061799
chr10 1058606 1080131
chr10 1075964 1085061



Also, the input is in a input.txt file, the output file should also be a text file. So basically the colon and the dash need to be replaced by one space. I'm thinking I would use the "cut c" function but not sure because the number of characters that have to be separated from the second column varies.. Any help would be great and really appreciated. Thanks!
 

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CUT(1)							    BSD General Commands Manual 						    CUT(1)

NAME
cut -- cut out selected portions of each line of a file SYNOPSIS
cut -b list [-n] [file ...] cut -c list [file ...] cut -f list [-w | -d delim] [-s] [file ...] DESCRIPTION
The cut utility cuts out selected portions of each line (as specified by list) from each file and writes them to the standard output. If no file arguments are specified, or a file argument is a single dash ('-'), cut reads from the standard input. The items specified by list can be in terms of column position or in terms of fields delimited by a special character. Column and field numbering start from 1. The list option argument is a comma or whitespace separated set of increasing numbers and/or number ranges. Number ranges consist of a num- ber, a dash ('-'), and a second number and select the columns or fields from the first number to the second, inclusive. Numbers or number ranges may be preceded by a dash, which selects all columns or fields from 1 to the last number. Numbers or number ranges may be followed by a dash, which selects all columns or fields from the last number to the end of the line. Numbers and number ranges may be repeated, overlap- ping, and in any order. It is not an error to select columns or fields not present in the input line. The options are as follows: -b list The list specifies byte positions. -c list The list specifies character positions. -d delim Use delim as the field delimiter character instead of the tab character. -f list The list specifies fields, separated in the input by the field delimiter character (see the -d option). Output fields are separated by a single occurrence of the field delimiter character. -n Do not split multi-byte characters. Characters will only be output if at least one byte is selected, and, after a prefix of zero or more unselected bytes, the rest of the bytes that form the character are selected. -s Suppress lines with no field delimiter characters. Unless specified, lines with no delimiters are passed through unmodified. -w Use whitespace (spaces and tabs) as the delimiter. Consecutive spaces and tabs count as one single field separator. ENVIRONMENT
The LANG, LC_ALL and LC_CTYPE environment variables affect the execution of cut as described in environ(7). EXIT STATUS
The cut utility exits 0 on success, and >0 if an error occurs. EXAMPLES
Extract users' login names and shells from the system passwd(5) file as ``name:shell'' pairs: cut -d : -f 1,7 /etc/passwd Show the names and login times of the currently logged in users: who | cut -c 1-16,26-38 SEE ALSO
colrm(1), paste(1) STANDARDS
The cut utility conforms to IEEE Std 1003.2-1992 (``POSIX.2''). HISTORY
A cut command appeared in AT&T System III UNIX. BSD
August 8, 2012 BSD
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