Hi All,
I am new to shell script.
I wrote a very small script that takes only digits as input-
but there is some problem in that.can you help me in debugging that.
#!/bin/ksh
echo "Digits as input"
read number
digit='eval '
if ]
then
echo "Entered number is a digit"
else
echo... (2 Replies)
Hi there,
I am new to scripting. Can anyone help me in writing a script which will display all the digits between 1 and 5 inclusive, one digit per line. Should use a loop to do this.
Thanks in advance!! (3 Replies)
I have got a file that contains both single and double digits like this
10 3 48 39 20 6 8
and i want to add zeros in front of every single digit to become double digits like this
10 03 48 39 20 06 08
I tried using Sed
sed 's/\(\)/0&/g' filename
or
sed 's/\(\)*/0&/g' filename
but i... (3 Replies)
hi group,
How can I count total number of 5's which are continuous in the end. i.e. in the below string, the o/p should be 4
I just know to calculate total number of 5's
$ echo "95952325555" | awk -F "5" '{print NF-1}'
6 (3 Replies)
Hello all! I've looked all over the internet and this site and have come up a loss with an easy way to make a bash script to do what I want to do. I have a file with a naming convention as follows:
2012-01-18 string of words here 123.jpg
2012-01-18 string of words here 1234.jpg
2012-01-18... (2 Replies)
Hi,
How I can replace last 8 ZEROS with 22991231?
19523479811841494432A2013052700000000
19523479811730333980A2013052700000000
19523479811417044397A2013052700000000
19523479811205895810C2013010120130131
A9523479811205895810A2013020120130228
19523479811205895810I2013030120130331... (9 Replies)
Is there any program that can create 6 digit numbers with:
(DIGIT_1)+(DIGIT_2)+(DIGIT_3)+(DIGIT_4)+(DIGIT_5)+(DIGIT_6)=10
Any perl or C also can. Anyone can help me? Thank you (6 Replies)
Hello everybody
I'm a little beginer for shell script as I started last night...
I have this script
cat fichier.txt | while read l ; do
#echo $l
echo $x
x=$(( $x + 1 ))
done
it's return
1
2
3
4 (4 Replies)
Hi ALL,
We have requirement in a file, i have multiple rows.
Example below:
Input file rows
01,1,102319,0,0,70,26,U,1,331,000000113200000011920000001212
01,1,102319,0,1,80,20,U,1,241,00000059420000006021
I need my output file should be as mentioned below. Last field should split for... (4 Replies)
Hi All ,
I am having an input file as stated below
5728 U_TOP_LOGIC/U_CM0P/core/u_cortexm0plus/u_top/u_sys/u_core/r03_q_reg_20_/Q 011
611 U_TOP_LOGIC/U_CM0P/core/u_cortexm0plus/u_top/u_sys/u_core/r04_q_reg_20_/Q 011
3486... (4 Replies)
Discussion started by: kshitij
4 Replies
LEARN ABOUT DEBIAN
bio::seqio::kegg
Bio::SeqIO::kegg(3pm) User Contributed Perl Documentation Bio::SeqIO::kegg(3pm)NAME
Bio::SeqIO::kegg - KEGG sequence input/output stream
SYNOPSIS
# It is probably best not to use this object directly, but
# rather go through the SeqIO handler system. Go:
use Bio::SeqIO;
$stream = Bio::SeqIO->new(-file => $filename, -format => 'KEGG');
while ( my $seq = $stream->next_seq() ) {
# do something with $seq
}
DESCRIPTION
This class transforms KEGG gene records into Bio::Seq objects.
Mapping of record properties to object properties
This section is supposed to document which sections and properties of a KEGG databank record end up where in the Bioperl object model. It
is far from complete and presently focuses only on those mappings which may be non-obvious. $seq in the text refers to the
Bio::Seq::RichSeqI implementing object returned by the parser for each record.
'ENTRY'
$seq->primary_id
'NAME'
$seq->display_id
'DEFINITION'
$seq->annotation->get_Annotations('description');
'ORTHOLOG'
grep {$_->database eq 'KO'} $seq->annotation->get_Annotations('dblink')
'CLASS'
grep {$_->database eq 'PATH'}
$seq->annotation->get_Annotations('dblink')
'POSITION'
FIXME, NOT IMPLEMENTED
'PATHWAY'
for my $pathway ( $seq->annotation->get_Annotations('pathway') ) {
#
}
'DBLINKS'
$seq->annotation->get_Annotations('dblink')
'CODON_USAGE'
FIXME, NOT IMPLEMENTED
'AASEQ'
$seq->translate->seq
'NTSEQ'
$seq-E<gt>seq
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Allen Day
Email allenday@ucla.edu
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
next_seq
Title : next_seq
Usage : $seq = $stream->next_seq()
Function: returns the next sequence in the stream
Returns : Bio::Seq::RichSeq object
Args :
write_seq
Title : write_seq
Note : write_seq() is not implemented for KEGG format output.
perl v5.14.2 2012-03-02 Bio::SeqIO::kegg(3pm)