Hi All,
I am new to shell script.
I wrote a very small script that takes only digits as input-
but there is some problem in that.can you help me in debugging that.
#!/bin/ksh
echo "Digits as input"
read number
digit='eval '
if ]
then
echo "Entered number is a digit"
else
echo... (2 Replies)
Hi there,
I am new to scripting. Can anyone help me in writing a script which will display all the digits between 1 and 5 inclusive, one digit per line. Should use a loop to do this.
Thanks in advance!! (3 Replies)
I have got a file that contains both single and double digits like this
10 3 48 39 20 6 8
and i want to add zeros in front of every single digit to become double digits like this
10 03 48 39 20 06 08
I tried using Sed
sed 's/\(\)/0&/g' filename
or
sed 's/\(\)*/0&/g' filename
but i... (3 Replies)
hi group,
How can I count total number of 5's which are continuous in the end. i.e. in the below string, the o/p should be 4
I just know to calculate total number of 5's
$ echo "95952325555" | awk -F "5" '{print NF-1}'
6 (3 Replies)
Hello all! I've looked all over the internet and this site and have come up a loss with an easy way to make a bash script to do what I want to do. I have a file with a naming convention as follows:
2012-01-18 string of words here 123.jpg
2012-01-18 string of words here 1234.jpg
2012-01-18... (2 Replies)
Hi,
How I can replace last 8 ZEROS with 22991231?
19523479811841494432A2013052700000000
19523479811730333980A2013052700000000
19523479811417044397A2013052700000000
19523479811205895810C2013010120130131
A9523479811205895810A2013020120130228
19523479811205895810I2013030120130331... (9 Replies)
Is there any program that can create 6 digit numbers with:
(DIGIT_1)+(DIGIT_2)+(DIGIT_3)+(DIGIT_4)+(DIGIT_5)+(DIGIT_6)=10
Any perl or C also can. Anyone can help me? Thank you (6 Replies)
Hello everybody
I'm a little beginer for shell script as I started last night...
I have this script
cat fichier.txt | while read l ; do
#echo $l
echo $x
x=$(( $x + 1 ))
done
it's return
1
2
3
4 (4 Replies)
Hi ALL,
We have requirement in a file, i have multiple rows.
Example below:
Input file rows
01,1,102319,0,0,70,26,U,1,331,000000113200000011920000001212
01,1,102319,0,1,80,20,U,1,241,00000059420000006021
I need my output file should be as mentioned below. Last field should split for... (4 Replies)
Hi All ,
I am having an input file as stated below
5728 U_TOP_LOGIC/U_CM0P/core/u_cortexm0plus/u_top/u_sys/u_core/r03_q_reg_20_/Q 011
611 U_TOP_LOGIC/U_CM0P/core/u_cortexm0plus/u_top/u_sys/u_core/r04_q_reg_20_/Q 011
3486... (4 Replies)
Discussion started by: kshitij
4 Replies
LEARN ABOUT DEBIAN
bio::index::fastq
Bio::Index::Fastq(3pm) User Contributed Perl Documentation Bio::Index::Fastq(3pm)NAME
Bio::Index::Fastq - Interface for indexing (multiple) fastq files
SYNOPSIS
# Complete code for making an index for several
# fastq files
use Bio::Index::Fastq;
use strict;
my $Index_File_Name = shift;
my $inx = Bio::Index::Fastq->new(
'-filename' => $Index_File_Name,
'-write_flag' => 1);
$inx->make_index(@ARGV);
# Print out several sequences present in the index
# in Fastq format
use Bio::Index::Fastq;
use strict;
my $Index_File_Name = shift;
my $inx = Bio::Index::Fastq->new('-filename' => $Index_File_Name);
my $out = Bio::SeqIO->new('-format' => 'Fastq','-fh' => *STDOUT);
foreach my $id (@ARGV) {
my $seq = $inx->fetch($id); # Returns Bio::Seq::Quality object
$out->write_seq($seq);
}
# or, alternatively
my $id;
my $seq = $inx->get_Seq_by_id($id); #identical to fetch
DESCRIPTION
Inherits functions for managing dbm files from Bio::Index::Abstract.pm, and provides the basic funtionallity for indexing fastq files, and
retrieving the sequence from them. Note: for best results 'use strict'.
Bio::Index::Fastq supports the Bio::DB::BioSeqI interface, meaning it can be used as a Sequence database for other parts of bioperl
FEED_BACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Tony Cox
Email - avc@sanger.ac.uk
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
_file_format
Title : _file_format
Function: The file format for this package, which is needed
by the SeqIO system when reading the sequence.
Returns : 'Fastq'
_index_file
Title : _index_file
Usage : $index->_index_file( $file_name, $i )
Function: Specialist function to index FASTQ format files.
Is provided with a filename and an integer
by make_index in its SUPER class.
Example :
Returns :
Args :
id_parser
Title : id_parser
Usage : $index->id_parser( CODE )
Function: Stores or returns the code used by record_id to
parse the ID for record from a string. Useful
for (for instance) specifying a different
parser for different flavours of FASTQ file.
Returns &default_id_parser (see below) if not
set. If you supply your own id_parser
subroutine, then it should expect a fastq
description line. An entry will be added to
the index for each string in the list returned.
Example : $index->id_parser( &my_id_parser )
Returns : ref to CODE if called without arguments
Args : CODE
default_id_parser
Title : default_id_parser
Usage : $id = default_id_parser( $header )
Function: The default Fastq ID parser for Fastq.pm
Returns $1 from applying the regexp /^>s*(S+)/
to $header.
Returns : ID string
Args : a fastq header line string
perl v5.14.2 2012-03-02 Bio::Index::Fastq(3pm)