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Top Forums Shell Programming and Scripting Uppercase/lowercase comparison of one character per line with awk?? Post 302385058 by durden_tyler on Thursday 7th of January 2010 03:00:06 AM
Old 01-07-2010
Quote:
Originally Posted by ivpz
.. There is only one A, i.e. 1 in column 2 and 0 in column 5.
Why column 5 ? If A, C, G, T are in columns 2, 3, 4, 5, then shouldn't "a" be in column 6 ?

Here's the line no. 8 (from the top) of your original post:

Code:
....,,..,,...,,......,...cA.c,cC. 1 1 0 0 0 3 0 0

Now, aren't the fields supposed to mean the following ?

Code:
Column 1                            Column 2   Column 3   Column 4   Column 5   Column 6   Column 7   Column 8   Column 9
The data                            "A" count  "C" count  "G" count  "T" count  "a" count  "c" count  "g" count  "t" count
=================================   =========  =========  =========  =========  =========  =========  =========  =========
.....,,..,,...,,......,...cA.c,cC.  1          1          0          0          0          3          0          0

So, count of all uppercase characters (A, C, G, T) in columns 2, 3, 4, 5 respectively = 1 + 1 + 0 + 0 = 2

Count of all lowercase characters (a, c, g, t) in columns 6, 7, 8, 9 respectively = 0 + 3 + 0 + 0 = 3

Hence, shouldn't line 8 be followed by "-" because count of uppercase characters < count of lowercase characters ?

tyler_durden
 

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Class::DBI::ColumnGrouper(3pm)				User Contributed Perl Documentation			    Class::DBI::ColumnGrouper(3pm)

NAME
Class::DBI::ColumnGrouper - Columns and Column Groups SYNOPSIS
my $colg = Class::DBI::ColumnGrouper->new; $colg->add_group(People => qw/star director producer/); my @cols = $colg->group_cols($group); my @all = $colg->all_columns; my @pri_col = $colg->primary; my @essential_cols = $colg->essential; DESCRIPTION
Each Class::DBI class maintains a list of its columns as class data. This provides an interface to that. You probably don't want to be dealing with this directly. METHODS
new my $colg = Class::DBI::ColumnGrouper->new; A new blank ColumnnGrouper object. clone my $colg2 = $colg->clone; Clone an existing ColumnGrouper. add_column / find_column $colg->add_column($name); my Class::DBI::Column $col = $colg->find_column($name); Add or return a Column object for the given column name. add_group $colg->add_group(People => qw/star director producer/); This adds a list of columns as a column group. group_cols / groups_for my @colg = $cols->group_cols($group); my @groups = $cols->groups_for(@cols); This returns a list of all columns which are in the given group, or the groups a given column is in. columns_in my @cols = $colg->columns_in(@groups); This returns a list of all columns which are in the given groups. all_columns my @all = $colg->all_columns; This returns a list of all the real columns. primary my $pri_col = $colg->primary; This returns a list of the columns in the Primary group. essential my @essential_cols = $colg->essential; This returns a list of the columns in the Essential group. perl v5.12.4 2005-09-14 Class::DBI::ColumnGrouper(3pm)
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