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Top Forums Shell Programming and Scripting Get columns from another file for match in col 2 in 1st file Post 302382978 by genehunter on Sunday 27th of December 2009 07:58:19 PM
Old 12-27-2009
Get columns from another file for match in col 2 in 1st file

Hi,
My first file has
Code:
592155 9 rs16916098 1
592156 19 rs7249604 1
592157 4 rs885156 1
592158 5 rs350067 1

2nd file has
Code:
9       rs16916098      0       113228129       2       4
19      rs7249604       0       58709070        4       2
2       rs17042833      0       113558750       4       2
4       rs10517059      0       24534680        2       1
4       rs885156        0       140779838       1       2

You will notice that Col3 of file1 = Col2 of file2.
I want to get for each value of Col2 in file 1 the equivalent matching Col 4 from file 2 and append it to the last column of the first file like this..

result_file
Code:
592155     9     rs16916098     1    113228129
592156     19     rs7249604     1  58709070
592157     4     rs885156     1  140779838

Trying to get this done with awk. Found this old thread with a similar problem
https://www.unix.com/shell-programmin...uce-3rd-2.html
But I am not smart enough to figure the way awk works with the provided solution..
Code:
awk -F, 'NR==FNR{a[$1$2]=$3;next}a[$1$2]{$4=a[$1$2];print}' OFS="," file1 file2

It would be very helpful to de-mystify the above code for the solution in the link.


Thanks
~GH

Last edited by genehunter; 12-27-2009 at 10:35 PM..
 

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TABS(1) 						    BSD General Commands Manual 						   TABS(1)

NAME
tabs -- set terminal tabs SYNOPSIS
tabs [-n | -a | -a2 | -c | -c2 | -c3 | -f | -p | -s | -u] [+m[n]] [-T type] tabs [-T type] [+[n]] n1[,n2,...] DESCRIPTION
The tabs utility displays a series of characters that clear the hardware terminal tab settings then initialises tab stops at specified posi- tions, and optionally adjusts the margin. In the first synopsis form, the tab stops set depend on the command line options used, and may be one of the predefined formats or at regular intervals. In the second synopsis form, tab stops are set at positions n1, n2, etc. If a position is preceded by a '+', it is relative to the previous position set. No more than 20 positions may be specified. If no tab stops are specified, the ``standard'' UNIX tab width of 8 is used. The options are as follows: -n Set a tab stop every n columns. If n is 0, the tab stops are cleared but no new ones are set. -a Assembler format (columns 1, 10, 16, 36, 72). -a2 Assembler format (columns 1, 10, 16, 40, 72). -c COBOL normal format (columns 1, 8, 12, 16, 20, 55) -c2 COBOL compact format (columns 1, 6, 10, 14, 49) -c3 COBOL compact format (columns 1, 6, 10, 14, 18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62, 67). -f FORTRAN format (columns 1, 7, 11, 15, 19, 23). -p PL/1 format (columns 1, 5, 9, 13, 17, 21, 25, 29, 33, 37, 41, 45, 49, 53, 57, 61). -s SNOBOL format (columns 1, 10, 55). -u Assembler format (columns 1, 12, 20, 44). +m[n], +[n] Set an n character left margin, or 10 if n is omitted. -T type Output escape sequence for the terminal type type. ENVIRONMENT
The LANG, LC_ALL, LC_CTYPE and TERM environment variables affect the execution of tabs as described in environ(7). The -T option overrides the setting of the TERM environment variable. If neither TERM nor the -T option are present, tabs will fail. EXIT STATUS
The tabs utility exits 0 on success, and >0 if an error occurs. SEE ALSO
expand(1), stty(1), tput(1), unexpand(1), termcap(5) STANDARDS
The tabs utility conforms to IEEE Std 1003.1-2001 (``POSIX.1''). HISTORY
A tabs utility appeared in PWB UNIX. This implementation was introduced in FreeBSD 5.0. BUGS
The current termcap(5) database does not define the 'ML' (set left soft margin) capability for any terminals. BSD
May 20, 2002 BSD
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