Dear Friends,
please help me.
I am using csplit to split the files,
i.e.,
csplit -f filetype_ -n 3 filename '/regexpn/' {5}
which will split file "filename" into 5 subfiles
filetype_000
filetype_001
filetype_002
filetype_003
filetype_004
but if I run the csplit commad again it will... (2 Replies)
I have a large file with the first 2 characters of each line determining the type of record. type 03 being a subheader and then it will have multiple 04 records.
eg: 03,xxx,xxxx,xxxx
04,xxxxxxxxxxxxxxxxxxxxxxxxxxxx
04,xxxxxxxxxxxxxxxxxxxxxxxxxxxx
03,xxx,xxx,xxx
... (2 Replies)
I am trying to use the csplit file on a file that contains records that have more than 2048 characters on a line. The resultant split file seems to ignore the rest of the line and I lose the data.
Is there any way that csplit can handle record lengths greater than 2048?
Thanks (0 Replies)
I have an excel file with more than 65K records... Since excel does not take more than 65K records i wan to split the file and send it as two excel files... Could some help me how to use the csplit by specifiying the no of records (7 Replies)
Hi All,
I have a strange behaviour from csplit command on some text files.
I have a comma separated file and data with in double quotes. This file is being generated from Sequential stage of Data stage tool.
This file has 67 fields in each records with some null and blank in the data.... (4 Replies)
Hello all
The below command works perfeft when executed from the shell prompt.
"csplit -f first Allocation.log.1 "%. Oct 02 .%" {1} "
and generates first00 file.
But it fails if I include the same command in my script.
I am trying to automate some process and this is turning... (1 Reply)
I am using GNU csplit to extract chapters from a big file into smaller files.
I want to use the -b option
-b, --suffix-format=FORMAT use sprintf FORMAT instead of %d
but I have failed so far.
1) All the generated files need to have a suffix .txt at the end
2) They have to look like... (1 Reply)
I want to split big files based on a pattern to stdout.
Although csplit works well for me splitting the output into separate files (e.g. xx00, xx01, xx02, ...), the following is not working as expected:
<code>
# assuming pattern occurs less than 100 times
csplit bigfile '%pattern%'... (2 Replies)
Hello
am trying to split the following top output at the TTY line but having some issues:
System: msisprd Sun Oct 9 09:35:37 2011
Load averages: 0.14, 0.17, 0.16
411 processes: 361 sleeping, 50 running
Cpu states:
CPU LOAD USER NICE SYS ... (3 Replies)
Input file:
CLK00027 TESTDATA 0 S 600000 \r
0001RFC 192321 321321 321321 \r
0002 rfd this is testdata1
CLK00027 TESTDATA 0 S 600000 \r
0001RFC 192321 321321 321321 \r
0002 rfd this is testdata2
I Need to split this file into seperate files
file1.txt
CLK00027 ... (1 Reply)
Discussion started by: VXANDERB
1 Replies
LEARN ABOUT DEBIAN
obrotate
obrotate(1) User's Reference Manual obrotate(1)NAME
obrotate -- batch-rotate dihedral angles matching SMARTS patterns
SYNOPSIS
obrotate 'SMARTS-pattern' filename atom1 atom2 atom3 atom4 angle
DESCRIPTION
The obrotate program rotates the torsional (dihedral) angle of a specified bond in molecules to that defined by the user. In other words, it
does the same as a user setting an angle in a molecular modelling package, but much faster and in batch mode (i.e. across multiple molecules
in a file).
The four atom IDs required are indexes into the SMARTS pattern, which starts at atom 0 (zero). The angle supplied is in degrees. The two
atoms used to set the dihedral angle <atom1> and <atom4> do not need to be connected to the atoms of the bond <atom2> and <atom3> in any way.
The order of the atoms matters -- the portion of the molecule attached to <atom1> and <atom2> remain fixed, but the portion bonded to <atom3>
and & <atom4> moves.
EXAMPLES
Let's say that you want to define the conformation of a large number of molecules with a pyridyl scaffold and substituted with an aliphatic
chain at the 3-position, for example for docking or 3D-QSAR purposes.
To set the value of the first dihedral angle to 90 degrees:
obrotate 'c1ccncc1CCC' pyridines.sdf 5 6 7 8 90
Here 6 and 7 define the bond to rotate in the SMARTS patter, i.e., c1-C and atoms 5 and 8 define the particular dihedral angle to rotate.
Since the atoms to define the dihedral do not need to be directly connected, the nitrogen in the pyridine can be used:
obrotate 'c1ccncc1CCC' pyridines.sdf 4 6 7 8 90
Keep the pyridyl ring fixed and moves the aliphatic chain:
obrotate 'c1ccncc1CCC' pyridines.sdf 5 6 7 8 90
Keep the aliphatic chain fixed and move the pyridyl ring:
obrotate 'c1ccncc1CCC' pyridines.sdf 8 7 6 5 90
SEE ALSO babel(1), obchiral(1), obfit(1), obgrep(1), obprop(1), obrotate(1).
The web pages for Open Babel can be found at: <http://openbabel.org/>
A guide for constructing SMARTS patterns can be found at: <http://www.daylight.com/dayhtml/doc/theory/theory.smarts.html>
AUTHORS
The obgrep program was contributed by Fabien Fontaine
Open Babel is developed by a cast of many, including currrent maintainers Geoff Hutchison, Chris Morley, Michael Banck, and innumerable oth-
ers who have contributed fixes and additions. For more contributors to Open Babel, see <http://openbabel.org/wiki/THANKS>
COPYRIGHT
Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc.
Some portions Copyright (C) 2001-2005 by Geoffrey R. Hutchison and other contributors.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by
the Free Software Foundation version 2 of the License.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABIL-
ITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
Open Babel 2.2 July 4, 2008 Open Babel 2.2