Sponsored Content
Top Forums Shell Programming and Scripting using awk to print average and standard deviation into a file Post 302381682 by durden_tyler on Saturday 19th of December 2009 06:15:33 PM
Old 12-19-2009
Code:
$
$ cat f6
80
25
57
98
95
78
92
18
77
19
$
$ awk '{x[NR]=$0; s+=$0; n++} END{a=s/n; for (i in x){ss += (x[i]-a)^2} sd = sqrt(ss/n); print "SD = "sd}' f6
SD = 30.3857
$
$

tyler_durden


Or a tad shorter:

Code:
awk '{x[NR]=$0; s+=$0} END{a=s/NR; for (i in x){ss += (x[i]-a)^2} sd = sqrt(ss/NR); print "SD = "sd}' f6


Last edited by durden_tyler; 12-19-2009 at 07:39 PM..
This User Gave Thanks to durden_tyler For This Post:
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Script for finding standard deviation

I have a CSV file that looks like 0,0,0,0,1,0,1,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0 10,11,7,0,4,12,2,3,7,0,11,3,12,4,0,5,5,4,5,0,8,6,12,0,9,3,3,0,2,7,8 19,11,7,0,4,14,16,10,8,2,13,7,15,6,0,76,6,4,10,0,18,10,17,1,11,3,3,0,9,9,8... (7 Replies)
Discussion started by: RJ17
7 Replies

2. Shell Programming and Scripting

Mean and Standard deviation

Hi all, I am new to shell scripting and wanna calculate the mean and standard deviation using shell programming. I have a file with letters that are repeating and their corresponding duration a 0.32 a 0.89 aa 0.34 aa 0.23 au 0.012 au 0.26... (4 Replies)
Discussion started by: lakshmikanth.pg
4 Replies

3. UNIX for Dummies Questions & Answers

Calculating the Standard Deviation for a column

Hi all, I want to calculate the standard deviation for a column (happens to be column 3). Does any know of simple awk script to do this? Thanks (1 Reply)
Discussion started by: kylle345
1 Replies

4. Shell Programming and Scripting

Standard deviation in awk

Hi all, I need to find the standard deviation of each column of a dataset below for each hour. The data is given in 5 second intervals as shown below DATE TIME FRAC_DAYS_SINCE_JAN1 FRAC_HRS_SINCE_JAN1 EPOCH_TIME ... (11 Replies)
Discussion started by: gd9629
11 Replies

5. Shell Programming and Scripting

AWK script for standard deviation / root mean square deviation

I have a file with say 50 columns, each containing a whole lot of data. Each column contains data from a separate simulation, but each simulation is related to the data in the last (REFERENCE) column $50 I need to calculate the RMS deviation for each data line, i.e. column 1 relative to... (12 Replies)
Discussion started by: chrisjorg
12 Replies

6. Shell Programming and Scripting

Finding standard deviation for all columns in a data file

Hi All, I want someone to modify the below script from this forum so that it can be used for all columns in the file( instead of only printing column 3 mean and standard deviation values). I don't know how to loop around all the columns. ... (3 Replies)
Discussion started by: ks_reddy
3 Replies

7. Shell Programming and Scripting

calculating row-wise standard deviation using awk

Hi, I have a file containing 100,000 rows-by-120 columns and I need to compute for the standard deviation for each row. Any idea on how to calculate row-wise standard deviation using awk? My sample data looks like this: input data: 23 35 12 25 16 17 18 19 29 12 12 26 15 14 15 23 12 12... (2 Replies)
Discussion started by: ida1215
2 Replies

8. Shell Programming and Scripting

Computing average and standard deviation from multiple text files

Hello there, I found an elegant solution to computing average values from multiple text files awk '{for (i=1;i<=NF;i++){if ($i!~"n/a"){a+=$i}else{b++}}}END{for (i=1;i<=FNR;i++){for (j=1;j<=NF;j++){printf (a/(3-b))((b>0)?"~"b" ":" ")};printf "\n"}}' file1 file2 file3 I tried to modify... (2 Replies)
Discussion started by: charmmilein
2 Replies

9. Shell Programming and Scripting

Output mean and standard deviation of a row

I have a file that looks that this: 820 890 530 1650 1600 1800 1850 1900 2270 1640 2300 1670 2080 2200 2350 1150 1630 2210 I would like to output the mean and standard deviation of each row so that my final output would look like this 820 890 530 746.667 155.849 1650 1600 1800... (5 Replies)
Discussion started by: kayak
5 Replies

10. Shell Programming and Scripting

SMA (Single Moving Average) and Standard Deviation

Hello Team, I am using the following awk script to calculate the SMA (Single Moving Average) for an specific period but now I would like to include the standard deviation output. Could you please help me to modify this awk shell script awk -F, -v points=5 ' { a = $2; ... (4 Replies)
Discussion started by: csierra
4 Replies
A2P(1)							 Perl Programmers Reference Guide						    A2P(1)

NAME
a2p - Awk to Perl translator SYNOPSIS
a2p [options] [filename] DESCRIPTION
A2p takes an awk script specified on the command line (or from standard input) and produces a comparable perl script on the standard output. OPTIONS Options include: -D<number> sets debugging flags. -F<character> tells a2p that this awk script is always invoked with this -F switch. -n<fieldlist> specifies the names of the input fields if input does not have to be split into an array. If you were translating an awk script that processes the password file, you might say: a2p -7 -nlogin.password.uid.gid.gcos.shell.home Any delimiter can be used to separate the field names. -<number> causes a2p to assume that input will always have that many fields. -o tells a2p to use old awk behavior. The only current differences are: o Old awk always has a line loop, even if there are no line actions, whereas new awk does not. o In old awk, sprintf is extremely greedy about its arguments. For example, given the statement print sprintf(some_args), extra_args; old awk considers extra_args to be arguments to "sprintf"; new awk considers them arguments to "print". "Considerations" A2p cannot do as good a job translating as a human would, but it usually does pretty well. There are some areas where you may want to examine the perl script produced and tweak it some. Here are some of them, in no particular order. There is an awk idiom of putting int() around a string expression to force numeric interpretation, even though the argument is always integer anyway. This is generally unneeded in perl, but a2p can't tell if the argument is always going to be integer, so it leaves it in. You may wish to remove it. Perl differentiates numeric comparison from string comparison. Awk has one operator for both that decides at run time which comparison to do. A2p does not try to do a complete job of awk emulation at this point. Instead it guesses which one you want. It's almost always right, but it can be spoofed. All such guesses are marked with the comment ""#???"". You should go through and check them. You might want to run at least once with the -w switch to perl, which will warn you if you use == where you should have used eq. Perl does not attempt to emulate the behavior of awk in which nonexistent array elements spring into existence simply by being referenced. If somehow you are relying on this mechanism to create null entries for a subsequent for...in, they won't be there in perl. If a2p makes a split line that assigns to a list of variables that looks like (Fld1, Fld2, Fld3...) you may want to rerun a2p using the -n option mentioned above. This will let you name the fields throughout the script. If it splits to an array instead, the script is probably referring to the number of fields somewhere. The exit statement in awk doesn't necessarily exit; it goes to the END block if there is one. Awk scripts that do contortions within the END block to bypass the block under such circumstances can be simplified by removing the conditional in the END block and just exiting directly from the perl script. Perl has two kinds of array, numerically-indexed and associative. Perl associative arrays are called "hashes". Awk arrays are usually translated to hashes, but if you happen to know that the index is always going to be numeric you could change the {...} to [...]. Iteration over a hash is done using the keys() function, but iteration over an array is NOT. You might need to modify any loop that iterates over such an array. Awk starts by assuming OFMT has the value %.6g. Perl starts by assuming its equivalent, $#, to have the value %.20g. You'll want to set $# explicitly if you use the default value of OFMT. Near the top of the line loop will be the split operation that is implicit in the awk script. There are times when you can move this down past some conditionals that test the entire record so that the split is not done as often. For aesthetic reasons you may wish to change index variables from being 1-based (awk style) to 0-based (Perl style). Be sure to change all operations the variable is involved in to match. Cute comments that say "# Here is a workaround because awk is dumb" are passed through unmodified. Awk scripts are often embedded in a shell script that pipes stuff into and out of awk. Often the shell script wrapper can be incorporated into the perl script, since perl can start up pipes into and out of itself, and can do other things that awk can't do by itself. Scripts that refer to the special variables RSTART and RLENGTH can often be simplified by referring to the variables $`, $& and $', as long as they are within the scope of the pattern match that sets them. The produced perl script may have subroutines defined to deal with awk's semantics regarding getline and print. Since a2p usually picks correctness over efficiency. it is almost always possible to rewrite such code to be more efficient by discarding the semantic sugar. For efficiency, you may wish to remove the keyword from any return statement that is the last statement executed in a subroutine. A2p catches the most common case, but doesn't analyze embedded blocks for subtler cases. ARGV[0] translates to $ARGV0, but ARGV[n] translates to $ARGV[$n-1]. A loop that tries to iterate over ARGV[0] won't find it. ENVIRONMENT
A2p uses no environment variables. AUTHOR
Larry Wall <larry@wall.org> FILES
SEE ALSO
perl The perl compiler/interpreter s2p sed to perl translator DIAGNOSTICS
BUGS
It would be possible to emulate awk's behavior in selecting string versus numeric operations at run time by inspection of the operands, but it would be gross and inefficient. Besides, a2p almost always guesses right. Storage for the awk syntax tree is currently static, and can run out. perl v5.14.2 2010-12-30 A2P(1)
All times are GMT -4. The time now is 06:44 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy