Paste two file side by side together based on specific pattern match problem
Input file_1:
Input file_2:
Desired output file:
File_1 consider the back-bone of my desire output file. The data at File_1 must be presented at the desired output file no matter is empty line or data that don't match with file 2.
Besides that, the output data sequence must follow exactly like file_1. Some data at file 1, might apprear more than once as well. My purpose is to paste those file_2 data that got match with file_1 data to the output file.
Thanks for any suggestion.
Hi,
I have to sql queries like
select sno,sname from temptable;
select deptno,dname from depttable;
In excel i want to specify the column number to which my output should be displayed.
please help me in this...
thanks in advance... (6 Replies)
Hi Everyone,
I need a shell/perl script to bring selected columns from all the files located in a directory and place them in a new file side by side.
File1:
a b c d
2 3 4 5
f g h i
..........
File2:
I II III IV
w x y z
..............
and so on many files are there...... (8 Replies)
I have 2 text files, both have one simple, single column. The 2 files might be the same length, or might not, and if not, it's unknown which one would be longer.
For this example, file1 is longer:
---file1
Joe
Bob
Mary
Sally
Fred
Elmer
David
---file2
Tomato
House
Car... (3 Replies)
I have installed WAMPSERVER 2.0 on my windows vista x64 system but still am having issues with getting the webserver to be seen outside my local network. It is working fine within my local network.
Been through several setup tutorials so far, no dice still.
For testing purposes I have... (1 Reply)
Hi All,
I have a file abc.xls which contains data
applciation usage
merlin 24000
hermes 48000
and my script generates an output to a file def.xls
applciation usage
merlin 23000
hermes 50000
Daily i want to schedule this script to run and I need the second column to be appended to the... (2 Replies)
Hi I'm trying to compare 3 or more files based on similar values and outputting them into 3 columns.
For example:
file1
ABC
DEF
GHI
file2
DEF
DER
file3
ABC
DER
The output should come out like this
file1 file2 file3
ABC ABC (4 Replies)
I have about 100s of files of type text in a known directory. I want to merge all files side by side. Number of lines in all the files will remain same.
For example file1 contains
cat
dog
File 2 contains
rat
mat
Output file should be
cat rat
dog mat
Using awk I was able to... (5 Replies)
Hi Team,
I have input like
Input file.txt
Contents:
Total: 939720704 bytes
Total: 521142272 bytes
Total: 262144 bytes
Total: 786432 bytes
Total: 9043968 bytes
Total: 9371648 bytes
I need out put like the content of file should be side by side.that is 1st line beside... (3 Replies)
Hi,
Thank you for your help in advance :D.
I have thousands of files like...
file01
file02
file03
.
.
.
file6324
I would like to paste every other file side by side so it looks like
file01 file02
file03 file04
...e.t.c
file6323 file6324 (3 Replies)
Could I run 2 python scripts at the same time side by side output on the same line in this same format but with scripts?
from itertools import izip_longest
with open("file1") as textfile1, open("file2") as textfile2:
for x, y in izip_longest(textfile1, textfile2, fillvalue=""):
x =... (4 Replies)
Discussion started by: bigvito19
4 Replies
LEARN ABOUT DEBIAN
bp_sreformat
BP_SREFORMAT(1p) User Contributed Perl Documentation BP_SREFORMAT(1p)NAME
bpsreformat - convert sequence formats
DESCRIPTION
This script uses the SeqIO system that allows conversion of sequence formats either sequence data or multiple sequence alignment data. The
name comes from the fact that Sean Eddy's program sreformat (part of the HMMER pkg) already does this. Sean's program tries to guess the
input formats while in our code we currently require your to specify what the input and output formats are and if the data is from a
multiple sequence alignment or from straight sequence files.
Usage:
bpsreformat -if INFORMAT -of OUTFORMAT -i FILENAME -o output.FORMAT
-h/--help Print this help
-if/--informat Specify the input format
-of/--outformat Specify the output format
-i/--input Specify the input file name
(to pass in data on STDIN use minus sign as filename)
-o/--output Specify the output file name
(to pass data out on STDOUT use minus sign as filename)
--msa Specify this is multiple sequence alignment data
--special Will pass on special parameters to the AlignIO/SeqIO
object -- most of these are for Bio::AlignIO objects
Comma separated list of the following
nointerleaved -- for phylip,non-interleaved format
idlinebreak -- for phylip, makes it molphy format
percentages -- for clustalw, show % id per line
perl v5.14.2 2012-03-02 BP_SREFORMAT(1p)