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Top Forums Shell Programming and Scripting Concatenating and appending string based on specific pattern match Post 302380386 by Scrutinizer on Tuesday 15th of December 2009 04:10:33 AM
Old 12-15-2009
Quote:
Originally Posted by patrick87
Thanks a lot, Scrutinizer.
Your code works perfectly.
But it will give the output result like this:
Code:
#GEO-2-rev 4050 3990 3041 2804 2734 2475
IJTOPKHIJEFVOPKOPKTHIJEFVHIJHIJOPKOPKHIJHIJTTEFVEFVOPKTTEFVEFVOPKHIJOPKOPKOPKTEFVEFVOPKHIJTEFVHIJHIJHIJOPKOPKTTOPKHIJTOPKTOPKEFVEFVEFVEFVOPKHIJEFVTEFVTHIJTOPKHIJEFVOPKOPKTHIJEFVHIJHIJOPKOPKHIJHIJTTEFVEFVOPKTTEFVEFVOPKHIJOPKOPKOPKEFVTEFVTTOPKTOPKTEFVOPKHIJTEFVTTTOPKEFVTEFVOPKTTOPKTHIJTTTOPKEFVTOPKTEFVEFVEFVTHIJEFVHIJOPKEFVHIJOPKHIJEFVEFVHIJEFVEFVEFVTHIJEFVHIJOPKTHIJ

#GEO-1-fwd 890 1519 1572 2030 
OPKHIJEFVTEFVHIJEFVOPKHIJTOPKEFVHIJTEFVOPKOPKHIJHIJHIJTTOPKHIJHIJEFVEFVOPKHIJOPKHIJOPKEFVEFVOPKHIJHIJEFVHIJHIJEFVTHIJOPKOPKTEFVEFVEFVOPKHIJOPKOPKHIJTTEFVEFVTEFVHIJOPKHIJEFVTOPKOPKTTOPKHIJOPKHIJEFVOPKTOPKTOPKHIJHIJTEFVOPKTOPKTOPKEFVOPKOPKEFVEFVTEFVOPKHIJEFVEFVOPKHIJOPKOPKHIJHIJEFVEFVHIJEFVEFVTOPKEFVOPKTHIJTTHIJOPK

In between, can I ask you about the meaning of A/B[r] and what is the $9 represent in your awk code?
What I understand is the header only from $1-$8,right?
Thanks again first, Scrutinizer.
Hi Patrick,

That is because in awk the order of associative array elements is undetermined. On my computer it gets printed in the right order but that is by chance. If that is important we'd have to something to ensure the right order. Single spaces and - are used as separation characters so there are more fields, hence the $9. We could improve the robustness by using * in the -F specification and then using the proper field number.
 

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SHELL-QUOTE(1p) 					User Contributed Perl Documentation					   SHELL-QUOTE(1p)

NAME
shell-quote - quote arguments for safe use, unmodified in a shell command SYNOPSIS
shell-quote [switch]... arg... DESCRIPTION
shell-quote lets you pass arbitrary strings through the shell so that they won't be changed by the shell. This lets you process commands or files with embedded white space or shell globbing characters safely. Here are a few examples. EXAMPLES
ssh preserving args When running a remote command with ssh, ssh doesn't preserve the separate arguments it receives. It just joins them with spaces and passes them to "$SHELL -c". This doesn't work as intended: ssh host touch 'hi there' # fails It creates 2 files, hi and there. Instead, do this: cmd=`shell-quote touch 'hi there'` ssh host "$cmd" This gives you just 1 file, hi there. process find output It's not ordinarily possible to process an arbitrary list of files output by find with a shell script. Anything you put in $IFS to split up the output could legitimately be in a file's name. Here's how you can do it using shell-quote: eval set -- `find -type f -print0 | xargs -0 shell-quote --` debug shell scripts shell-quote is better than echo for debugging shell scripts. debug() { [ -z "$debug" ] || shell-quote "debug:" "$@" } With echo you can't tell the difference between "debug 'foo bar'" and "debug foo bar", but with shell-quote you can. save a command for later shell-quote can be used to build up a shell command to run later. Say you want the user to be able to give you switches for a command you're going to run. If you don't want the switches to be re-evaluated by the shell (which is usually a good idea, else there are things the user can't pass through), you can do something like this: user_switches= while [ $# != 0 ] do case x$1 in x--pass-through) [ $# -gt 1 ] || die "need an argument for $1" user_switches="$user_switches "`shell-quote -- "$2"` shift;; # process other switches esac shift done # later eval "shell-quote some-command $user_switches my args" OPTIONS
--debug Turn debugging on. --help Show the usage message and die. --version Show the version number and exit. AVAILABILITY
The code is licensed under the GNU GPL. Check http://www.argon.org/~roderick/ or CPAN for updated versions. AUTHOR
Roderick Schertler <roderick@argon.org> perl v5.8.4 2005-05-03 SHELL-QUOTE(1p)
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