:confused: I have a tab delimited file that I need to extract data from and into a file with specific field specs. Each field has to be a certain amount of characters. So, the name field (from delimited file) might have only 15 characters but needs to be 25 (in new file) so I need to insert spaces... (5 Replies)
Hi,
I got a long list of contents:
>sequence_1
ASSSSSSSSSSSDDDDDDDDDDDCCCCCCC
ASDSFDFFDFDFFWERERERERFSDFESFSFD
>sequence_2
ASDFDFDFFDDFFDFDSFDSFDFSDFSDFDSFASDSADSADASD
ASDFFDFDFASFASFASFAFSFFSDASFASFASFAFS
>sequence_3
VEDFGSDGSDGSDGSDGSDGSDGSDG
dDFSDFSDFSDFSDFSDFSDFSDFSDF... (2 Replies)
Input file:
#abc_1
SAASFASFGGDSGDSGDSGSDGSDGSDGSDGSDGSDGSDGDS
Output file:
FASFGGDSGDS
I just want to print out the read from position 5 until position 15 from the data.
Below is the code that I just try but it is failed to get my desired output:
grep -v '#' input_file | awk... (5 Replies)
Hi Friends,
One question.
Supposed I want to extract data only for process named "sqlplus" how can I do it. Any suggestions?
I don't want all the data as it is not useful to me e.g.. Command I use is given below
extract -xp -p -r repfile -b"03/15/13 7:00 PM" -e"03/15/13 09:30 PM" -f... (1 Reply)
Bash scripting beginner here...
I have many folders, each folder representing one subject. Not all subjects have all the required files, so I need to somehow cycle through all the data and then extract the data only from subjects who have no files missing. I tried to output the ls command, but... (4 Replies)
data.txt has several information like the below..
<SERVER>:WEB:MYDOM01:/tmp/cong/MYDOM01,/tmp/app/MYDOM01
<WEBER>:CANES:https-web01,https-web02:/web/apps/https-web01/config
<SERVER>:WEB:MYDOM07:/tmp/cong/MYDOM07,/tmp/app/MYDOM07... (7 Replies)
Discussion started by: mohtashims
7 Replies
LEARN ABOUT DEBIAN
asntool
ASNTOOL(1) NCBI Tools User's Manual ASNTOOL(1)NAME
asntool - process ASN.1 module specifications
SYNOPSIS
asntool [-] [-B filename] [-D N] [-G] [-I str] [-J type] [-K str] [-L str] [-M filename,...] [-P str] [-Q] [-S filename] [-T filename] [-V]
[-X filename] [-Z] [-b N] [-d filename] [-e filename] [-f filename] [-l filename] -m filename [-o filename] [-p filename] [-t str]
[-v filename] [-w N] [-x filename]
DESCRIPTION
asntool reads, validates, and displays ASN.1 module specifications.
OPTIONS
A summary of options is included below.
- Print usage message
-B filename
Generate objects and code in files named filename.*
-D N Debugging level for code generation:
0 No debugging (default)
1 Shallow debugging
2 Deep debugging
3-9 Same as 2
-G Generate object loader .c and .h files
-I str Put "#include str" in generated .c file
-J type
Register type type with object manager
-K str In generated .c, force name of #included asn header to str
-L str Label registered type as str
-M filename,...
Search the ASN.1 modules in filename,... for external references
-P str XML module prefix for DOCTYPE
-Q Use quoted syntax form for generated include files
-S filename
Send debugging output to filename rather than stderr
-T filename
Dump ASN.1 tree to filename
-V Force CHOICE objects to use custom structures rather than ValNodePtrs, for compatibility with some old hand-coded object loaders.
-X filename
Write XML DTD to filename. If filename is "m", print each module to a separate file.
-Z Bit twiddle for optional zero value base slots
-b N Use N-byte buffers (default = 1024; anything between 512 and 10000 is legal)
-d filename
Read binary values from filename (requires -t)
-e filename
Write binary values to filename
-f filename
Write ASN.1 module to filename
-l filename
Write ASN.1 loader to filename
-m filename
Read ASN.1 module from filename
-o filename
Write header to filename
-p filename
Write print values to filename
-t str Expect binary values to have type str
-v filename
Read print values from filename
-w N Limit values in #defines to N bits (default = 31; anything between 31 and 128 is legal)
-x filename
Write XML data to filename
AUTHOR
The National Center for Biotechnology Information.
NCBI 2010-09-01 ASNTOOL(1)