12-02-2009
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Last edited by sauravbh; 12-02-2009 at 11:22 AM..
8 More Discussions You Might Find Interesting
1. Post Here to Contact Site Administrators and Moderators
Possible new rule for the "forum rules" list:
<UL>
<LI>Include as many pertinent details as possible in your post. Useful information usually includes: Vendor and version of Unix you are using, hardware platform, kernel version (if applicable). For hardware related questions include model... (1 Reply)
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3. What is on Your Mind?
Can someone suggest any online venues to assist in recruiting a senior C programmer (looking for someone interested in working on kerberos code).
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5. Shell Programming and Scripting
Hi,
I had completed RHCE and i am interested to learn shell scripting.
Request you to please let me know which book is best for learning shell scripting or any online website.
Thanks & Regards
arun (2 Replies)
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6. What is on Your Mind?
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7. Red Hat
Hi All,
I'm looking for good reference books or white papers about Linux Redhat Performance tuning / system tuning.
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8. OS X (Apple)
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LEARN ABOUT DEBIAN
bio::phylonetwork::factory
Bio::PhyloNetwork::Factory(3pm) User Contributed Perl Documentation Bio::PhyloNetwork::Factory(3pm)
NAME
Bio::PhyloNetwork::Factory - Module to sequentially generate Phylogenetic Networks
SYNOPSIS
use strict;
use warnings;
use Bio::PhyloNetwork;
use Bio::PhyloNetwork::Factory;
# Will generate sequentially all the 4059 binary tree-child phylogenetic
# networks with 4 leaves
my $factory=Bio::PhyloNetwork::Factory->new(-numleaves=>4);
my @nets;
while (my $net=$factory->next_network()) {
push @nets,$net;
print "".(scalar @nets).": ".$net->eNewick()."
";
}
DESCRIPTION
Sequentially builds a (binary tree-child) phylogenetic network each time next_network is called.
AUTHOR
Gabriel Cardona, gabriel(dot)cardona(at)uib(dot)es
SEE ALSO
Bio::PhyloNetwork
APPENDIX
The rest of the documentation details each of the object methods.
new
Title : new
Usage : my $factory = new Bio::PhyloNetwork::Factory();
Function: Creates a new Bio::PhyloNetwork::Factory
Returns : Bio::PhyloNetwork::RandomFactory
Args : -numleaves => integer
OR
-leaves => reference to an array (of leaves names)
-numhybrids => integer [default = numleaves -1]
-recurse => boolean [optional]
Returns a Bio::PhyloNetwork::Factory object. Such an object will sequentially create binary tree-child phylogenetic networks each time
next_network is called.
If the parameter -leaves=>@leaves is given, then the set of leaves of these networks will be @leaves. If it is given the parameter
-numleaves=>$numleaves, then the set of leaves will be "l1"..."l$numleaves".
If the parameter -numhybrids=>$numhybrids is given, then the generated networks will have at most $numhybrids hybrid nodes. Note that,
necessarily, $numhybrids < $numleaves.
If the parameter -recurse=>1 is given, then all networks with number of hybrid nodes less or equal to $numhybrids will be given; otherwise
only those with exactly $numhybrids hybrid nodes.
next_network
Title : next_network
Usage : my $net=$factory->next_network()
Function: returns a network
Returns : Bio::PhyloNetwork
Args : none
perl v5.14.2 2012-03-02 Bio::PhyloNetwork::Factory(3pm)